View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18298_low_3 (Length: 354)
Name: NF18298_low_3
Description: NF18298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18298_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 12 - 337
Target Start/End: Original strand, 40723838 - 40724163
Alignment:
| Q |
12 |
agagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaacctt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723838 |
agagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaacctt |
40723937 |
T |
|
| Q |
112 |
ctcaatgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcagaagttgtgaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723938 |
ctcaatgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcagaagttgtgaaa |
40724037 |
T |
|
| Q |
212 |
caatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40724038 |
caatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttc |
40724137 |
T |
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| Q |
312 |
ttcaaatgctttcctaagattgcttt |
337 |
Q |
| |
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|||||| ||||||||||||||||||| |
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| T |
40724138 |
ttcaaacgctttcctaagattgcttt |
40724163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 175 - 337
Target Start/End: Complemental strand, 40666066 - 40665903
Alignment:
| Q |
175 |
gattttagcccatccataagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcat |
274 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
40666066 |
gattctagcccatccataagagtcagaagttgtgagacaatccttctttcaacttcaccgtttgtcttctcccgcttgggtgcaatagaatcaatttcat |
40665967 |
T |
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| Q |
275 |
c-aataaagatgatggatggtgcattcttttctgcttcttcaaatgctttcctaagattgcttt |
337 |
Q |
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| T |
40665966 |
caaataaagatgatggatggtgcattcttttctgcttcttcaaacgctttcctaagattgcttt |
40665903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 40666209 - 40666102
Alignment:
| Q |
12 |
agagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaacctt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666209 |
agagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaacctt |
40666110 |
T |
|
| Q |
112 |
ctcaatgc |
119 |
Q |
| |
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|||||||| |
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| T |
40666109 |
ctcaatgc |
40666102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 31 - 337
Target Start/End: Original strand, 41092684 - 41092990
Alignment:
| Q |
31 |
gtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaaccttctcaatgccgggtcaatgc |
130 |
Q |
| |
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||||| || ||||| || ||||| ||||||| || ||||||||||||||||| || ||||||||||| || |||||||| || | ||| |||||||||| |
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| T |
41092684 |
gtatgaattcgaagaacctcaagacgcccaacctcgtctggaacaccaatatcaatctccctatcaaaccttccaaacctcctaagtgcagggtcaatgc |
41092783 |
T |
|
| Q |
131 |
tattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcagaagttgtgaaacaatccttctttctacttc |
230 |
Q |
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||||||| | ||| ||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||| |||| ||||| || |||||||| || |||||||| |
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| T |
41092784 |
tattgggcctatttgtggctcccataacaattacatgtgcacgtgatttaagaccatccataagggtcaagagttgggagacaatcctcctctctacttc |
41092883 |
T |
|
| Q |
231 |
accatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcttcaaatgctttcctaaga |
330 |
Q |
| |
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||| | || || || ||||| || || || ||||| || |||||||||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||| |
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| T |
41092884 |
accgtgagttttctctcgcttaggagctatggaatctatctcatcaataaagatgatggaaggtgcattcttctcagcttcctcaaatgccttccttaga |
41092983 |
T |
|
| Q |
331 |
ttgcttt |
337 |
Q |
| |
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||||||| |
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| T |
41092984 |
ttgcttt |
41092990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 27977635 - 27977314
Alignment:
| Q |
16 |
agcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaaccttctca |
115 |
Q |
| |
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|||||||| ||||| ||||| ||||| || || ||||| || |||| ||||||||| ||||||||||| || |||| |||||| || |||||||| | | |
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| T |
27977635 |
agcttcatattttttgtatggatgcggagaacctcaagacgtccaacttcatctggtacaccaatatcaatctcccgatcaaaccttccaaacctccgaa |
27977536 |
T |
|
| Q |
116 |
atgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcagaagttgtgaaacaat |
215 |
Q |
| |
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|| ||||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||||||||| ||||||||||| || |||| || || |||||||| |
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| T |
27977535 |
gagcagggtcgatgctattgggacgatttgttgctcccataacaattacatgtgcacgggatttaagcccatccatgagggtcaagagctgggaaacaat |
27977436 |
T |
|
| Q |
216 |
ccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcttca |
315 |
Q |
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|||| || ||||||||||| ||||| |||| ||| || ||||| || || || |||||||| |||||||| || ||||||||||| || |||||||| |
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| T |
27977435 |
tcttcgctcaacttcaccattagtcttctccctctttggagcaatggagtctatctcatcaatgaagatgattgagggtgcattcttctcagcttcttcg |
27977336 |
T |
|
| Q |
316 |
aatgctttcctaagattgcttt |
337 |
Q |
| |
|
||||| ||||| ||||| |||| |
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| T |
27977335 |
aatgccttcctcagattacttt |
27977314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 295
Target Start/End: Complemental strand, 15690360 - 15690253
Alignment:
| Q |
186 |
atccataagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatg |
285 |
Q |
| |
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|||||||||| ||| | |||||||||||||||||| || |||||| || |||||| || | |||||| || ||||||||| |||||||||||||| | |
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| T |
15690360 |
atccataagattcaagacttgtgaaacaatccttctatcaacttcatcacgtgtcttctctc--ttgggtacagtagaatcaaattcatcaataaagaag |
15690263 |
T |
|
| Q |
286 |
atggatggtg |
295 |
Q |
| |
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||| |||||| |
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|
| T |
15690262 |
atgaatggtg |
15690253 |
T |
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