View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18298_low_6 (Length: 222)

Name: NF18298_low_6
Description: NF18298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18298_low_6
NF18298_low_6
[»] chr6 (13 HSPs)
chr6 (35-180)||(29234375-29234523)
chr6 (1-38)||(14763620-14763657)
chr6 (1-37)||(3922536-3922572)
chr6 (1-37)||(23068693-23068729)
chr6 (1-35)||(3218453-3218487)
chr6 (1-35)||(4243235-4243269)
chr6 (1-35)||(33595632-33595666)
chr6 (1-34)||(3922851-3922884)
chr6 (1-34)||(6755229-6755262)
chr6 (1-38)||(23069008-23069045)
chr6 (179-216)||(29234320-29234357)
chr6 (1-33)||(3218152-3218184)
chr6 (1-33)||(33595320-33595352)
[»] chr7 (18 HSPs)
chr7 (1-44)||(49114175-49114218)
chr7 (1-36)||(7417824-7417859)
chr7 (1-35)||(8437304-8437338)
chr7 (1-35)||(19305739-19305773)
chr7 (1-35)||(28408553-28408587)
chr7 (1-38)||(32178167-32178204)
chr7 (1-37)||(8437618-8437654)
chr7 (5-41)||(31894571-31894607)
chr7 (1-36)||(2933284-2933319)
chr7 (1-36)||(32177853-32177888)
chr7 (1-32)||(32523515-32523546)
chr7 (5-36)||(44307609-44307640)
chr7 (5-35)||(1511503-1511533)
chr7 (5-35)||(10878624-10878654)
chr7 (1-35)||(49113861-49113895)
chr7 (5-34)||(1511190-1511219)
chr7 (1-34)||(7417511-7417544)
chr7 (5-37)||(31894255-31894287)
[»] chr2 (17 HSPs)
chr2 (1-45)||(18916937-18916981)
chr2 (1-38)||(17846004-17846041)
chr2 (1-37)||(9320115-9320151)
chr2 (1-36)||(2318802-2318837)
chr2 (1-35)||(601645-601679)
chr2 (1-35)||(18916624-18916658)
chr2 (1-35)||(27360118-27360152)
chr2 (1-35)||(27360434-27360468)
chr2 (1-34)||(10044745-10044778)
chr2 (1-34)||(10108813-10108846)
chr2 (1-35)||(4261468-4261502)
chr2 (1-35)||(17846320-17846354)
chr2 (1-31)||(44536497-44536527)
chr2 (1-34)||(20363970-20364003)
chr2 (1-34)||(20364283-20364316)
chr2 (5-33)||(5547103-5547131)
chr2 (2-34)||(18178402-18178434)
[»] chr4 (38 HSPs)
chr4 (1-43)||(33369500-33369542)
chr4 (1-38)||(49621750-49621787)
chr4 (1-37)||(20930972-20931008)
chr4 (1-36)||(21053608-21053643)
chr4 (1-36)||(49621437-49621472)
chr4 (1-35)||(13294915-13294949)
chr4 (1-35)||(23163592-23163626)
chr4 (1-34)||(9525805-9525838)
chr4 (1-34)||(23163281-23163314)
chr4 (1-34)||(26202522-26202555)
chr4 (1-34)||(28458834-28458867)
chr4 (1-34)||(33692262-33692295)
chr4 (1-34)||(37872767-37872800)
chr4 (1-34)||(41689389-41689422)
chr4 (1-34)||(55742621-55742654)
chr4 (1-37)||(33692574-33692610)
chr4 (1-37)||(48419529-48419565)
chr4 (1-37)||(55742920-55742956)
chr4 (5-36)||(25297678-25297709)
chr4 (1-36)||(50161113-50161148)
chr4 (1-32)||(50161429-50161460)
chr4 (1-35)||(9526121-9526155)
chr4 (5-35)||(30055520-30055550)
chr4 (1-35)||(42856803-42856837)
chr4 (1-35)||(46143583-46143617)
chr4 (1-35)||(52690095-52690129)
chr4 (5-34)||(2685985-2686014)
chr4 (1-34)||(21707915-21707948)
chr4 (5-34)||(30055208-30055237)
chr4 (1-34)||(42857114-42857147)
chr4 (1-34)||(52690410-52690443)
chr4 (1-45)||(3546477-3546521)
chr4 (1-37)||(20931290-20931326)
chr4 (1-37)||(28458518-28458554)
chr4 (5-33)||(30799640-30799668)
chr4 (1-37)||(32488581-32488617)
chr4 (1-37)||(37873075-37873111)
chr4 (1-33)||(46143273-46143305)
[»] chr8 (20 HSPs)
chr8 (1-36)||(2968182-2968217)
chr8 (1-35)||(14577178-14577212)
chr8 (1-35)||(17876082-17876116)
chr8 (1-35)||(27912410-27912444)
chr8 (1-35)||(27958829-27958863)
chr8 (1-35)||(35482701-35482735)
chr8 (1-35)||(35483014-35483048)
chr8 (1-34)||(30904672-30904705)
chr8 (5-36)||(20178369-20178400)
chr8 (5-36)||(20223097-20223128)
chr8 (1-36)||(30904359-30904394)
chr8 (6-40)||(4129060-4129094)
chr8 (1-35)||(10682060-10682094)
chr8 (1-31)||(17875771-17875801)
chr8 (1-30)||(10682373-10682402)
chr8 (1-34)||(21661008-21661041)
chr8 (5-34)||(30928629-30928658)
chr8 (7-35)||(3691581-3691609)
chr8 (5-41)||(18929695-18929731)
chr8 (5-33)||(42123703-42123731)
[»] chr5 (22 HSPs)
chr5 (1-36)||(40833934-40833969)
chr5 (1-35)||(35363302-35363336)
chr5 (1-35)||(37093756-37093790)
chr5 (1-38)||(2094571-2094608)
chr5 (1-34)||(2094885-2094918)
chr5 (1-34)||(18485659-18485692)
chr5 (1-34)||(20769712-20769745)
chr5 (1-34)||(30370511-30370544)
chr5 (1-34)||(30370823-30370856)
chr5 (1-34)||(32936518-32936551)
chr5 (1-34)||(35362984-35363017)
chr5 (1-34)||(40834248-40834281)
chr5 (1-37)||(32936203-32936239)
chr5 (5-36)||(32458103-32458134)
chr5 (5-36)||(35362234-35362265)
chr5 (1-35)||(7145532-7145566)
chr5 (1-35)||(13600758-13600792)
chr5 (5-35)||(15179106-15179136)
chr5 (1-35)||(20339155-20339189)
chr5 (5-35)||(32994471-32994501)
chr5 (5-34)||(19558189-19558218)
chr5 (1-37)||(20770025-20770061)
[»] chr3 (19 HSPs)
chr3 (1-44)||(37513403-37513446)
chr3 (1-35)||(8851803-8851837)
chr3 (1-35)||(22316719-22316753)
chr3 (1-35)||(22975344-22975378)
chr3 (1-35)||(28830065-28830099)
chr3 (1-35)||(49711400-49711434)
chr3 (1-34)||(49621291-49621324)
chr3 (1-33)||(48434115-48434147)
chr3 (1-32)||(11121595-11121626)
chr3 (1-32)||(22975657-22975688)
chr3 (1-32)||(55009411-55009442)
chr3 (1-35)||(9296382-9296416)
chr3 (1-35)||(25847757-25847791)
chr3 (1-31)||(36229766-36229796)
chr3 (1-35)||(37513090-37513124)
chr3 (1-34)||(22317032-22317065)
chr3 (1-34)||(23043502-23043535)
chr3 (1-34)||(33491717-33491750)
chr3 (1-33)||(49711711-49711743)
[»] chr1 (17 HSPs)
chr1 (1-36)||(2026719-2026754)
chr1 (1-35)||(7113864-7113898)
chr1 (1-35)||(17611424-17611458)
chr1 (1-34)||(2027032-2027065)
chr1 (1-34)||(12139337-12139370)
chr1 (1-38)||(25779881-25779918)
chr1 (1-34)||(40902327-40902360)
chr1 (1-35)||(1549326-1549360)
chr1 (5-35)||(12115268-12115298)
chr1 (1-35)||(17611737-17611771)
chr1 (1-31)||(25780201-25780231)
chr1 (1-31)||(30002214-30002244)
chr1 (1-35)||(30562783-30562817)
chr1 (1-35)||(30563096-30563130)
chr1 (1-34)||(7114175-7114208)
chr1 (5-37)||(4969681-4969713)
chr1 (1-37)||(17985284-17985320)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-35)||(136915-136949)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-35)||(330196-330230)
[»] scaffold0347 (2 HSPs)
scaffold0347 (5-37)||(12250-12282)
scaffold0347 (5-34)||(11940-11969)
[»] scaffold0311 (1 HSPs)
scaffold0311 (5-35)||(12913-12943)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 29234523 - 29234375
Alignment:
Q  35 tttaaaataagaagtgtgtacttttgtttttattatataaatttcattataaatc---tcgcatattcatttcctattatgattgttgaaataaaggtga 131  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||   | |||||||||||||||||||||||||||||||| |||||||    
T  29234523 tttaaaataagaagtgtgtacttttgtttttattatataaattttattataaatcatcttgcatattcatttcctattatgattgttgaaatgaaggtga 29234424  T
Q  132 cgaaaacatataatgattttatgattgttttccttcctttaattttgac 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29234423 cgaaaacatataatgattttatgattgttttccttcctttaattttgac 29234375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14763620 - 14763657
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14763620 aataaagttaagggactaattgtgtaattttgccttta 14763657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3922572 - 3922536
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  3922572 aataaagttaagggactaattgtgtaattttgccttt 3922536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23068729 - 23068693
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  23068729 aataaagttaagggactaattgtgtaattttgccttt 23068693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3218453 - 3218487
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  3218453 aataaagttaagggactaattgtgtaattttgcct 3218487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4243235 - 4243269
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4243235 aataaagttaagggactaattgtgtaattttgcct 4243269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33595632 - 33595666
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  33595632 aataaagttaagggactaattgtgtaattttgcct 33595666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3922851 - 3922884
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  3922851 aataaagttaagggactaattgtgtaattttgcc 3922884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6755229 - 6755262
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  6755229 aataaagttaagggactaattgtgtaattttgcc 6755262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23069008 - 23069045
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttta 38  Q
    |||||||||||| |||||||||||||||||||||||||    
T  23069008 aataaagttaagagactaattgtgtaattttgccttta 23069045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 29234357 - 29234320
Alignment:
Q  179 acacatagaagatgatttacgattgttttcctttgctt 216  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  29234357 acacatagaagatgatttacgattgtttttctttgctt 29234320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3218184 - 3218152
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgc 33  Q
    |||||||||||||||||||||||||||||||||    
T  3218184 aataaagttaagggactaattgtgtaattttgc 3218152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33595352 - 33595320
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgc 33  Q
    |||||||||||||||||||||||||||||||||    
T  33595352 aataaagttaagggactaattgtgtaattttgc 33595320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 49114175 - 49114218
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctttaaaataa 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  49114175 aataaagttaagggactaattgtgtaattttgcctttaaaataa 49114218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7417824 - 7417859
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  7417824 aataaagttaagggactaattgtgtaattttgcctt 7417859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8437338 - 8437304
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  8437338 aataaagttaagggactaattgtgtaattttgcct 8437304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19305773 - 19305739
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  19305773 aataaagttaagggactaattgtgtaattttgcct 19305739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28408553 - 28408587
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  28408553 aataaagttaagggactaattgtgtaattttgcct 28408587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32178167 - 32178204
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttta 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  32178167 aataaagttaagggactaattgtgtaattttaccttta 32178204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8437618 - 8437654
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  8437618 aataaagttaagggactaattatgtaattttgccttt 8437654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 31894571 - 31894607
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcctttaaaa 41  Q
    ||||||||||||||||||||||||||||||| |||||    
T  31894571 aagttaagggactaattgtgtaattttgcctgtaaaa 31894607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 2933319 - 2933284
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  2933319 aataaagttaagggactaattgtgtaattttacctt 2933284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 32177888 - 32177853
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  32177888 aataaagttaaaggactaattgtgtaattttgcctt 32177853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 32523515 - 32523546
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttg 32  Q
    ||||||||||||||||||||||||||||||||    
T  32523515 aataaagttaagggactaattgtgtaattttg 32523546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 44307640 - 44307609
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||||    
T  44307640 aagttaagggactaattgtgtaattttgcctt 44307609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 1511503 - 1511533
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||    
T  1511503 aagttaagggactaattgtgtaattttgcct 1511533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 10878654 - 10878624
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||    
T  10878654 aagttaagggactaattgtgtaattttgcct 10878624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 49113895 - 49113861
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  49113895 aataaagttaaaggactaattgtgtaattttgcct 49113861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 1511219 - 1511190
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||    
T  1511219 aagttaagggactaattgtgtaattttgcc 1511190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7417544 - 7417511
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  7417544 aataaagttaagggattaattgtgtaattttgcc 7417511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 31894287 - 31894255
Alignment:
Q  5 aagttaagggactaattgtgtaattttgccttt 37  Q
    |||||||||||||| ||||||||||||||||||    
T  31894287 aagttaagggactatttgtgtaattttgccttt 31894255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18916937 - 18916981
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctttaaaataag 45  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  18916937 aataaagttaagggactaattatgtaattttgcctttaaaataag 18916981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17846041 - 17846004
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17846041 aataaagttaagggactaattgtgtaattttgccttta 17846004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9320115 - 9320151
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  9320115 aataaagttaagggactaattgtgtaattttgccttt 9320151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2318802 - 2318837
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  2318802 aataaagttaagggactaattgtgtaattttgcctt 2318837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 601645 - 601679
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  601645 aataaagttaagggactaattgtgtaattttgcct 601679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18916658 - 18916624
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  18916658 aataaagttaagggactaattgtgtaattttgcct 18916624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 27360152 - 27360118
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27360152 aataaagttaagggactaattgtgtaattttgcct 27360118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27360434 - 27360468
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27360434 aataaagttaagggactaattgtgtaattttgcct 27360468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10044778 - 10044745
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  10044778 aataaagttaagggactaattgtgtaattttgcc 10044745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10108846 - 10108813
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  10108846 aataaagttaagggactaattgtgtaattttgcc 10108813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4261468 - 4261502
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  4261468 aataaagttaacggactaattgtgtaattttgcct 4261502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17846320 - 17846354
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  17846320 aataaagttaagggactaattgtataattttgcct 17846354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 44536497 - 44536527
Alignment:
Q  1 aataaagttaagggactaattgtgtaatttt 31  Q
    |||||||||||||||||||||||||||||||    
T  44536497 aataaagttaagggactaattgtgtaatttt 44536527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20364003 - 20363970
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    |||||| |||||||||||||||||||||||||||    
T  20364003 aataaaattaagggactaattgtgtaattttgcc 20363970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20364283 - 20364316
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  20364283 aataaagttaaaggactaattgtgtaattttgcc 20364316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 5547131 - 5547103
Alignment:
Q  5 aagttaagggactaattgtgtaattttgc 33  Q
    |||||||||||||||||||||||||||||    
T  5547131 aagttaagggactaattgtgtaattttgc 5547103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 18178402 - 18178434
Alignment:
Q  2 ataaagttaagggactaattgtgtaattttgcc 34  Q
    |||||||||| ||||||||||||||||||||||    
T  18178402 ataaagttaaaggactaattgtgtaattttgcc 18178434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33369542 - 33369500
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctttaaaata 43  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  33369542 aataaagttaagggactaattgtgtaattttgcctataaaata 33369500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49621750 - 49621787
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49621750 aataaagttaagggactaattgtgtaattttgccttta 49621787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 20931008 - 20930972
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  20931008 aataaagttaagggactaattgtgtaattttgccttt 20930972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21053608 - 21053643
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  21053608 aataaagttaagggactaattgtgtaattttgcctt 21053643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 49621472 - 49621437
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  49621472 aataaagttaagggactaattgtgtaattttgcctt 49621437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13294915 - 13294949
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  13294915 aataaagttaagggactaattgtgtaattttgcct 13294949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23163592 - 23163626
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  23163592 aataaagttaagggactaattgtgtaattttgcct 23163626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9525838 - 9525805
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  9525838 aataaagttaagggactaattgtgtaattttgcc 9525805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 23163314 - 23163281
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  23163314 aataaagttaagggactaattgtgtaattttgcc 23163281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 26202555 - 26202522
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  26202555 aataaagttaagggactaattgtgtaattttgcc 26202522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 28458834 - 28458867
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  28458834 aataaagttaagggactaattgtgtaattttgcc 28458867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33692295 - 33692262
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  33692295 aataaagttaagggactaattgtgtaattttgcc 33692262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37872800 - 37872767
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  37872800 aataaagttaagggactaattgtgtaattttgcc 37872767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41689422 - 41689389
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  41689422 aataaagttaagggactaattgtgtaattttgcc 41689389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 55742654 - 55742621
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  55742654 aataaagttaagggactaattgtgtaattttgcc 55742621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33692574 - 33692610
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  33692574 aataaaattaagggactaattgtgtaattttgccttt 33692610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48419529 - 48419565
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  48419529 aataaagttaagggactaattgtgttattttgccttt 48419565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 55742920 - 55742956
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  55742920 aataaagttaaaggactaattgtgtaattttgccttt 55742956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 25297709 - 25297678
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||||    
T  25297709 aagttaagggactaattgtgtaattttgcctt 25297678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 50161148 - 50161113
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  50161148 aataaagttaagggactaattgtgtaattttacctt 50161113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 50161429 - 50161460
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttg 32  Q
    ||||||||||||||||||||||||||||||||    
T  50161429 aataaagttaagggactaattgtgtaattttg 50161460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9526121 - 9526155
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  9526121 aataaagttaagggactaattgtgttattttgcct 9526155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 30055520 - 30055550
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||    
T  30055520 aagttaagggactaattgtgtaattttgcct 30055550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42856837 - 42856803
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  42856837 aataaaattaagggactaattgtgtaattttgcct 42856803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 46143583 - 46143617
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    ||||||||||||| |||||||||||||||||||||    
T  46143583 aataaagttaaggcactaattgtgtaattttgcct 46143617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 52690129 - 52690095
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  52690129 aataaagttaagcgactaattgtgtaattttgcct 52690095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 2686014 - 2685985
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||    
T  2686014 aagttaagggactaattgtgtaattttgcc 2685985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21707915 - 21707948
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  21707915 aataaagttaagagactaattgtgtaattttgcc 21707948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 30055237 - 30055208
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||    
T  30055237 aagttaagggactaattgtgtaattttgcc 30055208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42857114 - 42857147
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    |||||| |||||||||||||||||||||||||||    
T  42857114 aataaaattaagggactaattgtgtaattttgcc 42857147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 52690410 - 52690443
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  52690410 aataaagttaagagactaattgtgtaattttgcc 52690443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3546521 - 3546477
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctttaaaataag 45  Q
    ||||||||||||||||||||| |||||||||| ||  ||||||||    
T  3546521 aataaagttaagggactaattatgtaattttgtctaaaaaataag 3546477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20931290 - 20931326
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  20931290 aataaagttaaggaactaatcgtgtaattttgccttt 20931326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28458554 - 28458518
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  28458554 aataatgttaagggactaattgtgtaattttgtcttt 28458518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 30799640 - 30799668
Alignment:
Q  5 aagttaagggactaattgtgtaattttgc 33  Q
    |||||||||||||||||||||||||||||    
T  30799640 aagttaagggactaattgtgtaattttgc 30799668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32488617 - 32488581
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    |||||||||||||||||||  ||||||||||||||||    
T  32488617 aataaagttaagggactaaaagtgtaattttgccttt 32488581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37873075 - 37873111
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    ||||||||||||||||||||| | |||||||||||||    
T  37873075 aataaagttaagggactaattatataattttgccttt 37873111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 46143305 - 46143273
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgc 33  Q
    |||||| ||||||||||||||||||||||||||    
T  46143305 aataaaattaagggactaattgtgtaattttgc 46143273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2968182 - 2968217
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  2968182 aataaagttaagggactaattgtgtaattttgcctt 2968217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14577178 - 14577212
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  14577178 aataaagttaagggactaattgtgtaattttgcct 14577212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17876082 - 17876116
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  17876082 aataaagttaagggactaattgtgtaattttgcct 17876116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27912410 - 27912444
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27912410 aataaagttaagggactaattgtgtaattttgcct 27912444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27958829 - 27958863
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27958829 aataaagttaagggactaattgtgtaattttgcct 27958863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35482735 - 35482701
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  35482735 aataaagttaagggactaattgtgtaattttgcct 35482701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35483014 - 35483048
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  35483014 aataaagttaagggactaattgtgtaattttgcct 35483048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30904672 - 30904705
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  30904672 aataaagttaagggactaattgtgtaattttgcc 30904705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 20178400 - 20178369
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||||    
T  20178400 aagttaagggactaattgtgtaattttgcctt 20178369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 20223128 - 20223097
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||||    
T  20223128 aagttaagggactaattgtgtaattttgcctt 20223097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 30904394 - 30904359
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  30904394 aataaagttaagggattaattgtgtaattttgcctt 30904359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 4129060 - 4129094
Alignment:
Q  6 agttaagggactaattgtgtaattttgcctttaaa 40  Q
    |||||||||||||||||||||||||| ||||||||    
T  4129060 agttaagggactaattgtgtaattttacctttaaa 4129094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10682094 - 10682060
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  10682094 aataaagttaagggattaattgtgtaattttgcct 10682060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 17875801 - 17875771
Alignment:
Q  1 aataaagttaagggactaattgtgtaatttt 31  Q
    |||||||||||||||||||||||||||||||    
T  17875801 aataaagttaagggactaattgtgtaatttt 17875771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 10682373 - 10682402
Alignment:
Q  1 aataaagttaagggactaattgtgtaattt 30  Q
    ||||||||||||||||||||||||||||||    
T  10682373 aataaagttaagggactaattgtgtaattt 10682402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21661008 - 21661041
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  21661008 aataaagttaagggactaaatgtgtaattttgcc 21661041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 30928629 - 30928658
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||    
T  30928629 aagttaagggactaattgtgtaattttgcc 30928658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 3691609 - 3691581
Alignment:
Q  7 gttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||    
T  3691609 gttaagggactaattgtgtaattttgcct 3691581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 18929731 - 18929695
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcctttaaaa 41  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  18929731 aagttaagggactaaatgtgtaattttgcctataaaa 18929695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 42123731 - 42123703
Alignment:
Q  5 aagttaagggactaattgtgtaattttgc 33  Q
    |||||||||||||||||||||||||||||    
T  42123731 aagttaagggactaattgtgtaattttgc 42123703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40833969 - 40833934
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  40833969 aataaagttaagggactaattgtgtaattttgcctt 40833934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35363302 - 35363336
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  35363302 aataaagttaagggactaattgtgtaattttgcct 35363336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37093756 - 37093790
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  37093756 aataaagttaagggactaattgtgtaattttgcct 37093790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2094608 - 2094571
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttta 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  2094608 aataaagttaagggattaattgtgtaattttgccttta 2094571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2094885 - 2094918
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  2094885 aataaagttaagggactaattgtgtaattttgcc 2094918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 18485692 - 18485659
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  18485692 aataaagttaagggactaattgtgtaattttgcc 18485659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20769745 - 20769712
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  20769745 aataaagttaagggactaattgtgtaattttgcc 20769712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30370544 - 30370511
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  30370544 aataaagttaagggactaattgtgtaattttgcc 30370511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30370823 - 30370856
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  30370823 aataaagttaagggactaattgtgtaattttgcc 30370856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32936518 - 32936551
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  32936518 aataaagttaagggactaattgtgtaattttgcc 32936551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35363017 - 35362984
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  35363017 aataaagttaagggactaattgtgtaattttgcc 35362984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 40834248 - 40834281
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  40834248 aataaagttaagggactaattgtgtaattttgcc 40834281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32936239 - 32936203
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    |||||||||||| ||||||||||||||||||||||||    
T  32936239 aataaagttaagtgactaattgtgtaattttgccttt 32936203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 32458103 - 32458134
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||||    
T  32458103 aagttaagggactaattgtgtaattttgcctt 32458134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 35362234 - 35362265
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||||    
T  35362234 aagttaagggactaattgtgtaattttgcctt 35362265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7145566 - 7145532
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  7145566 aataaagttaagggactaattgtgttattttgcct 7145532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13600758 - 13600792
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  13600758 aataaagttaagagactaattgtgtaattttgcct 13600792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 15179106 - 15179136
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||    
T  15179106 aagttaagggactaattgtgtaattttgcct 15179136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 20339189 - 20339155
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  20339189 aataaagttaagggattaattgtgtaattttgcct 20339155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 32994471 - 32994501
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||    
T  32994471 aagttaagggactaattgtgtaattttgcct 32994501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 19558189 - 19558218
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||    
T  19558189 aagttaagggactaattgtgtaattttgcc 19558218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20770025 - 20770061
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  20770025 aataatgttaagggactaattgtgtaattttgtcttt 20770061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37513403 - 37513446
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctttaaaataa 44  Q
    ||||||||||||||||||||||||||||||||||  ||||||||    
T  37513403 aataaagttaagggactaattgtgtaattttgccaataaaataa 37513446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8851837 - 8851803
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  8851837 aataaagttaagggactaattgtgtaattttgcct 8851803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22316753 - 22316719
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  22316753 aataaagttaagggactaattgtgtaattttgcct 22316719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22975378 - 22975344
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  22975378 aataaagttaagggactaattgtgtaattttgcct 22975344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28830065 - 28830099
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  28830065 aataaagttaagggactaattgtgtaattttgcct 28830099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 49711434 - 49711400
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  49711434 aataaagttaagggactaattgtgtaattttgcct 49711400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 49621291 - 49621324
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  49621291 aataaagttaagggactaattgtgtaattttgcc 49621324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 48434115 - 48434147
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgc 33  Q
    |||||||||||||||||||||||||||||||||    
T  48434115 aataaagttaagggactaattgtgtaattttgc 48434147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 11121595 - 11121626
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttg 32  Q
    ||||||||||||||||||||||||||||||||    
T  11121595 aataaagttaagggactaattgtgtaattttg 11121626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 22975657 - 22975688
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttg 32  Q
    ||||||||||||||||||||||||||||||||    
T  22975657 aataaagttaagggactaattgtgtaattttg 22975688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 55009411 - 55009442
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttg 32  Q
    ||||||||||||||||||||||||||||||||    
T  55009411 aataaagttaagggactaattgtgtaattttg 55009442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9296416 - 9296382
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  9296416 aataaagttaagggactaattgtgtagttttgcct 9296382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 25847757 - 25847791
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  25847757 aataaaattaagggactaattgtgtaattttgcct 25847791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 36229796 - 36229766
Alignment:
Q  1 aataaagttaagggactaattgtgtaatttt 31  Q
    |||||||||||||||||||||||||||||||    
T  36229796 aataaagttaagggactaattgtgtaatttt 36229766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37513124 - 37513090
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  37513124 aataaagttaagggactaattgtgttattttgcct 37513090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 22317032 - 22317065
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    |||||||||||||||||||| |||||||||||||    
T  22317032 aataaagttaagggactaatcgtgtaattttgcc 22317065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 23043502 - 23043535
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  23043502 aataaagttaaaggactaattgtgtaattttgcc 23043535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33491717 - 33491750
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    |||||||||||| |||||||||||||||||||||    
T  33491717 aataaagttaagagactaattgtgtaattttgcc 33491750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 49711711 - 49711743
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgc 33  Q
    ||||||||||||||||||||| |||||||||||    
T  49711711 aataaagttaagggactaattatgtaattttgc 49711743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 2026754 - 2026719
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcctt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  2026754 aataaagttaagggactaattgtgtaattttgcctt 2026719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7113898 - 7113864
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  7113898 aataaagttaagggactaattgtgtaattttgcct 7113864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17611458 - 17611424
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  17611458 aataaagttaagggactaattgtgtaattttgcct 17611424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2027032 - 2027065
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  2027032 aataaagttaagggactaattgtgtaattttgcc 2027065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12139337 - 12139370
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  12139337 aataaagttaagggactaattgtgtaattttgcc 12139370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25779918 - 25779881
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttta 38  Q
    |||||||||||||||||||||||||||||||| |||||    
T  25779918 aataaagttaagggactaattgtgtaattttgtcttta 25779881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 40902360 - 40902327
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  40902360 aataaagttaagggactaattgtgtaattttgcc 40902327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1549360 - 1549326
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  1549360 aataaagttaagggactaattgtgttattttgcct 1549326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 12115268 - 12115298
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||    
T  12115268 aagttaagggactaattgtgtaattttgcct 12115298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17611737 - 17611771
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    ||||||||||||||||||||| |||||||||||||    
T  17611737 aataaagttaagggactaattatgtaattttgcct 17611771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 25780201 - 25780231
Alignment:
Q  1 aataaagttaagggactaattgtgtaatttt 31  Q
    |||||||||||||||||||||||||||||||    
T  25780201 aataaagttaagggactaattgtgtaatttt 25780231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 30002244 - 30002214
Alignment:
Q  1 aataaagttaagggactaattgtgtaatttt 31  Q
    |||||||||||||||||||||||||||||||    
T  30002244 aataaagttaagggactaattgtgtaatttt 30002214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30562817 - 30562783
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  30562817 aataaagttaagggactaattgtgttattttgcct 30562783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30563096 - 30563130
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  30563096 aataaagttaagggactaatcgtgtaattttgcct 30563130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7114175 - 7114208
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  7114175 aataaagttaatggactaattgtgtaattttgcc 7114208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 4969681 - 4969713
Alignment:
Q  5 aagttaagggactaattgtgtaattttgccttt 37  Q
    |||||||| ||||||||||||||||||||||||    
T  4969681 aagttaagtgactaattgtgtaattttgccttt 4969713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17985320 - 17985284
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgccttt 37  Q
    |||||||||||| |||||||||||||||||| |||||    
T  17985320 aataaagttaagagactaattgtgtaattttaccttt 17985284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 136949 - 136915
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  136949 aataaagttaagggactaattgtgtaattttgcct 136915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 330230 - 330196
Alignment:
Q  1 aataaagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||||||    
T  330230 aataaagttaagggactaattgtgtaattttgcct 330196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 12250 - 12282
Alignment:
Q  5 aagttaagggactaattgtgtaattttgccttt 37  Q
    |||||||||||||||||||||||||||||||||    
T  12250 aagttaagggactaattgtgtaattttgccttt 12282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 11969 - 11940
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcc 34  Q
    ||||||||||||||||||||||||||||||    
T  11969 aagttaagggactaattgtgtaattttgcc 11940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 12913 - 12943
Alignment:
Q  5 aagttaagggactaattgtgtaattttgcct 35  Q
    |||||||||||||||||||||||||||||||    
T  12913 aagttaagggactaattgtgtaattttgcct 12943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University