View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18298_low_8 (Length: 203)
Name: NF18298_low_8
Description: NF18298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18298_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 7623874 - 7624045
Alignment:
| Q |
15 |
catagggagtgatgtggggatgaagggtcaagctggtgtaaatttccaattagaggaagtggttttggacctggtggagttgatgatgctcttctagtat |
114 |
Q |
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| T |
7623874 |
cataaggagtgatgtggggatgaagggtcaagctggtgtaaatttccaattagaggaagtggttttggacctggtggagttgatgatgctcttctagtat |
7623973 |
T |
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| Q |
115 |
tctttattttgtggatgtgtataatgaatagaattaagattggcaagagagaaagaagcacaagatcaatct |
186 |
Q |
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| T |
7623974 |
tctttattttgtggatgtgtataatgaatagaattaagattggcaagagagaaagaagcacaagatcaatct |
7624045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 7636966 - 7637130
Alignment:
| Q |
15 |
catagggagtgatgtggggatgaagggtcaagctggtgtaaatttccaattagaggaagtggttttggacctggtggagttgatgatgctcttctagtat |
114 |
Q |
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| T |
7636966 |
cataaggagtgatgtggggatgaagggtcaagctggtgtagatttccaattagaggaagtggttttggacctggtggagttgatgatgctctactagtac |
7637065 |
T |
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| Q |
115 |
tctttattttgtggatgtgtataatgaatagaattaagattggcaagagagaaagaagcacaaga |
179 |
Q |
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| T |
7637066 |
tccttattttgtagatgtgtataatgaatagaattaagattggcaagagagaaagaagcacaaga |
7637130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 7630183 - 7630325
Alignment:
| Q |
15 |
catagggagtgatgtggggatgaagggtcaagctggtgtaaatttccaattagaggaagtggttttggacctggtggagttgatgatgctcttctagtat |
114 |
Q |
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| T |
7630183 |
catagggagtgatgtggggatgaagggtcaagttggtgtagatttccaattagaggaaatggttttggacctggtggagttgatgatgctcttctagtac |
7630282 |
T |
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| Q |
115 |
tctttattttgtggatgtgtataatgaatagaattaagattgg |
157 |
Q |
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| T |
7630283 |
tctttgttttgtgtatgtggataattaatataataaggattgg |
7630325 |
T |
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