View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18299_high_5 (Length: 349)
Name: NF18299_high_5
Description: NF18299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18299_high_5 |
 | |
|
| [»] scaffold0008 (4 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 6139320 - 6139571
Alignment:
| Q |
11 |
cagagaatccatctcgtcctggcggtaataaccacattttcatttcaacttctaatgaacttagggaagagaggaacgctctcagggatgaggtatatat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139320 |
cagagaatccatctcgtcctggcggtaataaccgcattttcatttcaacttctaatgaacttagggaagagaggaacgctctcagggatgaggtatatat |
6139419 |
T |
|
| Q |
111 |
actttcttaattacttgtgattatattttgtttttcattagtataaatgaatttagtgtttaataatgtacttcactttcaaatattctggatttatttt |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139420 |
actttcttaattacttgtgattattttttgtttttcattagtataaatgaatttagtgtttaataatgtacttcactttcaaatattctggatttatttt |
6139519 |
T |
|
| Q |
211 |
ccatgattaattgttagtatttaatttgtaattatatagtgtgttgccatat |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139520 |
ccatgattaattgttagtatttaatttgtaattatatagtgtgttgccatat |
6139571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 6139591 - 6139665
Alignment:
| Q |
259 |
atattccaatcactccaagtgtaaatttaatattacattgacgaatgaaaaatgaagaataacatatgcgttagt |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139591 |
atattccaatcactccaagtgtaaatttaatattacattgacgaatgaaaaatgaagaataacatatgcgttagt |
6139665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 6152228 - 6152315
Alignment:
| Q |
41 |
accacattttcatttcaacttctaatgaacttagggaagagaggaacgctctcagggatgaggtatatatactttcttaattacttgt |
128 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6152228 |
accacaatttcatttcaacttctcatgaacttaggccagagaggaacaggctcaggattgaggtatatatactttcttaattacttgt |
6152315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 6126633 - 6126712
Alignment:
| Q |
48 |
tttcatttcaacttctaatgaacttagggaagagaggaacgctctcagggatgaggtatatatactttcttaattacttg |
127 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||| |||| || ||||||||||||||||||||| ||||||| |
|
|
| T |
6126633 |
tttcatttcaacttctcatgaacttaggctagagaggaacatgctcatggttgaggtatatatactttcttagttacttg |
6126712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 214
Target Start/End: Original strand, 6146042 - 6146216
Alignment:
| Q |
41 |
accacattttcatttcaacttctaatgaacttagggaagagaggaacgctctcagggatgaggtatatatactttcttaattacttgtgattat--attt |
138 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||||| |||||||||| | ||||| ||||||| ||||||||||| | ||||||| | ||| | || |
|
|
| T |
6146042 |
accacaatttaatttcaacttctcatgaacttaggccagagaggaacaggcacagggttgaggtacatatactttctaagttacttgataatattgactt |
6146141 |
T |
|
| Q |
139 |
tgtttttcattagtataaatgaatttagtgtttaataatgtacttcactttcaaatattctggatttattttccat |
214 |
Q |
| |
|
|| || ||||||||||||||||| | ||||||| |||| ||||| |||||||| |||| ||||||||| |||| |
|
|
| T |
6146142 |
tggttgatattagtataaatgaattca-tgtttaaagatgtgcttcattttcaaattttctcgatttatttaccat |
6146216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 25364117 - 25364333
Alignment:
| Q |
11 |
cagagaatccatctcgtcctggcggtaataaccacattttcatttcaacttctaatgaacttagggaagagaggaacgctctcagggatgaggtatatat |
110 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25364117 |
cagagaatccagctctttctggcggtaataaccgcattttcatttcaacttctgatgaacttagggaagagaggaacgctctcatggatgaggtatatat |
25364216 |
T |
|
| Q |
111 |
actttcttaattacttgtgattatattttgtttttcattagtataaatgaatttagtgtttaataatgtacttcactttcaaatattctggatttatttt |
210 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25364217 |
gctttcttaattacttgtgattatttttggttgttcattggtataaatgaatttagtg-ttaataatgtgcttcactttcaaatattctggatttatttt |
25364315 |
T |
|
| Q |
211 |
ccatgattaattgttagt |
228 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
25364316 |
ccatgattaattgttagt |
25364333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 262
Target Start/End: Original strand, 25364356 - 25364390
Alignment:
| Q |
228 |
tatttaatttgtaattatatagtgtgttgccatat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
25364356 |
tatttaatttgtaattatatagtgtgttgccatat |
25364390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 7954 - 7734
Alignment:
| Q |
11 |
cagagaatccatctcgtcctggcggtaataaccacattttcatttcaacttctaatgaacttagggaagagaggaacgctctcagggatgaggtatatat |
110 |
Q |
| |
|
||||||||||| |||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7954 |
cagagaatccagctcgtcctggtggtaataagcgcattttcatttcaacttctgatgaacttagggaagggaggaacgctctcagggatgaggtatatat |
7855 |
T |
|
| Q |
111 |
actttcttaattacttgtgattatattttgtttttcattagtataaatgaatttagtgtttaataatgtacttcactttcaaatattctggatt----ta |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| || |
|
|
| T |
7854 |
actttcttaattacttgtgattatttttggttgttcattagtataaatgaatttagtg-ttaataatgtgcttcactttcaaatattctagatttatata |
7756 |
T |
|
| Q |
207 |
ttttccatgattaattgttagt |
228 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
7755 |
ttttccatgattaatcgttagt |
7734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 18521 - 18315
Alignment:
| Q |
25 |
cgtcctggcggtaataaccacattttcatttcaacttctaatgaacttagggaagagaggaacgctctcagggatgaggtatatatactttcttaattac |
124 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18521 |
cgtcctggtggtaataagcgcattttcatttcaacttctgatgaacttagggaagggaggaacgctctcagggatgaggtatatatactttcttaattac |
18422 |
T |
|
| Q |
125 |
ttgtgattatattttgtttttcattagtataaatgaatttagtgtttaataatgtacttcactttcaaatattctggatt----tattttccatgattaa |
220 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
18421 |
ttgtgattatttttggttgttcattagtataaatgaatttagtg-ttaataatgtgcttcacttttaaatattctagatttatatattttccatgattaa |
18323 |
T |
|
| Q |
221 |
ttgttagt |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
18322 |
ttgttagt |
18315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 262
Target Start/End: Complemental strand, 7711 - 7677
Alignment:
| Q |
228 |
tatttaatttgtaattatatagtgtgttgccatat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7711 |
tatttaatttgtaattatatagtgtgttgccatat |
7677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 258
Target Start/End: Complemental strand, 18261 - 18231
Alignment:
| Q |
228 |
tatttaatttgtaattatatagtgtgttgcc |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
18261 |
tatttaatttgtaattatatagtgtgttgcc |
18231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 7917866 - 7917821
Alignment:
| Q |
11 |
cagagaatccatctcgtcctggcggtaataaccacattttcatttc |
56 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| | ||||||||||| |
|
|
| T |
7917866 |
cagagaatccagctcgtgctggcggtaataacgatattttcatttc |
7917821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University