View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18299_high_9 (Length: 209)

Name: NF18299_high_9
Description: NF18299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18299_high_9
NF18299_high_9
[»] chr5 (1 HSPs)
chr5 (9-193)||(40162999-40163184)
[»] chr3 (4 HSPs)
chr3 (9-122)||(53556560-53556672)
chr3 (9-93)||(43399776-43399860)
chr3 (9-52)||(14459044-14459087)
chr3 (11-52)||(12812685-12812726)
[»] chr8 (3 HSPs)
chr8 (9-122)||(38681413-38681526)
chr8 (9-122)||(38682666-38682779)
chr8 (9-96)||(16395887-16395973)
[»] chr1 (2 HSPs)
chr1 (9-52)||(50290686-50290729)
chr1 (9-52)||(40981370-40981413)
[»] chr4 (1 HSPs)
chr4 (13-61)||(30179327-30179375)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 40162999 - 40163184
Alignment:
Q  9 cttatcatcatcaccaccgccaaccctcgccccccatctatcggcggcgaccaccaaacttctccctcaatccaccgacgttct-cccccttatgatcca 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  40162999 cttatcatcatcaccaccgccaaccctctccccccatctatcggcggcgaccaccaaacttctccctcaatcctccgacgttctccccccttatgatcca 40163098  T
Q  108 cacacctcctcacacttcgcaccttttcaacaccaatcgctgcctctccctgtccatcgaatctccttcgaagcctatctctccct 193  Q
    |||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  40163099 cacacctcatcacacttcgcaccctttcaacaccaaccgctgcctctccctgtccatcgaatctccttcggagcctgtctctccct 40163184  T

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Target: chr3 (Bit Score: 70; Significance: 9e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 53556672 - 53556560
Alignment:
Q  9 cttatcatcatcaccaccgccaaccctcgccccccatctatcggcggcgaccaccaaacttctccctcaatccaccgacgttctcccccttatgatccac 108  Q
    ||||||||||||||||||| |||||||| ||||| ||| |||||||||||||||||| | ||||||||||||||| ||||||||||||||| || |||||    
T  53556672 cttatcatcatcaccaccggcaaccctctccccc-atccatcggcggcgaccaccaagcctctccctcaatccactgacgttctcccccttctgctccac 53556574  T
Q  109 acacctcctcacac 122  Q
    ||| ||||||||||    
T  53556573 acatctcctcacac 53556560  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 43399776 - 43399860
Alignment:
Q  9 cttatcatcatcaccaccgccaaccctcgccccccatctatcggcggcgaccaccaaacttctccctcaatccaccgacgttctc 93  Q
    |||||||||||||  |||| |||||||| ||||||||| || ||||||||||||||| | ||||||| ||||||| |||||||||    
T  43399776 cttatcatcatcataaccggcaaccctctccccccatccattggcggcgaccaccaagcctctcccttaatccactgacgttctc 43399860  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 14459087 - 14459044
Alignment:
Q  9 cttatcatcatcaccaccgccaaccctcgccccccatctatcgg 52  Q
    |||||||||||||||||||||||||||| ||||||||| |||||    
T  14459087 cttatcatcatcaccaccgccaaccctctccccccatccatcgg 14459044  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 12812726 - 12812685
Alignment:
Q  11 tatcatcatcaccaccgccaaccctcgccccccatctatcgg 52  Q
    |||||||||||||||| ||||||||| ||||||||| |||||    
T  12812726 tatcatcatcaccaccaccaaccctctccccccatccatcgg 12812685  T

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Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 38681413 - 38681526
Alignment:
Q  9 cttatcatcatcaccaccgccaaccctcgccccccatctatcggcggcgaccaccaaacttctccctcaatccaccgacgttctcccccttatgatccac 108  Q
    ||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| | |||||||||| ||||||| |||||||||| | || |||||    
T  38681413 cttatcatcatcaccaccgtcaaccctctccccccatccatcggcggcgaccaccaagcctctccctcaagccaccgaggttctcccccctctgctccac 38681512  T
Q  109 acacctcctcacac 122  Q
    | | ||||||||||    
T  38681513 atatctcctcacac 38681526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 38682666 - 38682779
Alignment:
Q  9 cttatcatcatcaccaccgccaaccctcgccccccatctatcggcggcgaccaccaaacttctccctcaatccaccgacgttctcccccttatgatccac 108  Q
    ||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| | |||||||||| ||||||| |||||||||| | || |||||    
T  38682666 cttatcatcatcaccaccgtcaaccctctccccccatccatcggcggcgaccaccaagcctctccctcaagccaccgaggttctcccccctctgctccac 38682765  T
Q  109 acacctcctcacac 122  Q
    | | ||||||||||    
T  38682766 atatctcctcacac 38682779  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 16395887 - 16395973
Alignment:
Q  9 cttatcatcatcaccaccgccaaccctcgccccccatctatcggcggcgaccaccaaacttctccctcaatccaccgacgttctcccc 96  Q
    ||||||||| |||||||||||||||||| |||||  || ||||||||| |||||||||| ||| |||||||||| |||||||||||||    
T  16395887 cttatcatcttcaccaccgccaaccctctcccccattc-atcggcggcaaccaccaaacctctgcctcaatccatcgacgttctcccc 16395973  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 50290686 - 50290729
Alignment:
Q  9 cttatcatcatcaccaccgccaaccctcgccccccatctatcgg 52  Q
    |||||||||||||||||||||||||||| ||||||||| |||||    
T  50290686 cttatcatcatcaccaccgccaaccctctccccccatccatcgg 50290729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 40981413 - 40981370
Alignment:
Q  9 cttatcatcatcaccaccgccaaccctcgccccccatctatcgg 52  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||    
T  40981413 cttatcatcatcaccaccgccagccctctccccccatccatcgg 40981370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 30179327 - 30179375
Alignment:
Q  13 tcatcatcaccaccgccaaccctcgccccccatctatcggcggcgacca 61  Q
    |||||||||||||| ||||||||| ||| |||||  |||||||||||||    
T  30179327 tcatcatcaccaccaccaaccctctccctccatccgtcggcggcgacca 30179375  T

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