View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18299_low_2 (Length: 844)
Name: NF18299_low_2
Description: NF18299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18299_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 773; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 773; E-Value: 0
Query Start/End: Original strand, 14 - 826
Target Start/End: Original strand, 26276217 - 26277029
Alignment:
| Q |
14 |
catcaacggaggccctccaattcagcctatcatgggaatcatcaatagagagggtaaccgtgagaatttgctttgctaactctttagacttttgtatcag |
113 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276217 |
catcaacagaggccctccaattcagcctatcatgggaatcatcaatagagagggtaaccgtgagaatttgctttgctaactctttagacttttgtatcag |
26276316 |
T |
|
| Q |
114 |
atacatggggatattccaattaccatccagaatgtaatctgctaccttcatgttaagggcagggtgcatgtgcagagggatattaagagattccacaata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276317 |
atacatggggatattccaattaccatccagaatgtaatctgctaccttcatgttaagggcagggtgcatgtgcagagggatattaagagattccacaata |
26276416 |
T |
|
| Q |
214 |
gattgttctaaccatttatctgtccagaagttgacagtgttcccattacctattgaccatgaggattgctcagcaatcattctgagatggactctcattc |
313 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
26276417 |
gattgttctaaccatttgtctgtccagaagttgacagtgttcccattacctattgaccatgaggattgctcagcattcattctgagatggactatcattc |
26276516 |
T |
|
| Q |
314 |
ccgaccaaactgaagacgctctattgtaggtgataggctttccattctttaagtaccgggttctacacatttgtgtccattgctcgtcagaagtgactaa |
413 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276517 |
ccgaccaaaatgaagacgctctattgtaggtgataggctttccattctttaagtaccgggttctacacatttgtgtccattgctcgtcagaagtgactaa |
26276616 |
T |
|
| Q |
414 |
agaccaacaaagctgcagcagggaggatgaattgaccaaccttgggtccttaacagatagacttccttcctcatttggtttacataaatccctccaagcc |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26276617 |
agaccaacaaagctgcagcagggaggatgaattgaccagccttgggtccttcacagatagacctccttcctcatttggtttacataaatccctccaagcc |
26276716 |
T |
|
| Q |
514 |
accgtacaaatttttgcctgagtgatatcaccgctccaaataaaggtctttatcatcttggttaactgcttcaaaagattagcaggccaaggataaacat |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276717 |
accgtacaaatttttgcctgagtgatatcaccgctccaaataaaggtctttatcatcttggttaactgcttcaaaagattagcaggccaaggataaacat |
26276816 |
T |
|
| Q |
614 |
gaaatgagtacagcaacatactatttatcacagaattgacaagttgtactctccccattatagataacagcaagcctttccaaacagccaatttgacttt |
713 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276817 |
gaaatgagtacagcagcatactatttatcacagaattgacaagttgtactctccccattatagataacagcaagcctttccaaacagccaatttgacttt |
26276916 |
T |
|
| Q |
714 |
gattctgtccacaataggtcggaaatgatgagcttttgatctgcctttgaagagagggtgcgtgattgtttctaggtgctgcttctgtaaaggccaattg |
813 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276917 |
gattatgtccacaataggtcggaaatgatgagcttttgatctgcctttgaagagagggtgcgtgattgtttctaggtgctgcttctgtaaaggccaattg |
26277016 |
T |
|
| Q |
814 |
gagtcctctgatc |
826 |
Q |
| |
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||||||||||||| |
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| T |
26277017 |
gagtcctctgatc |
26277029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 538 - 697
Target Start/End: Original strand, 39398737 - 39398897
Alignment:
| Q |
538 |
atatcaccgctccaaataaaggtctttatcatcttggttaact-gcttcaaaagattagcaggccaaggataaacatgaaatgagtacagcaacatacta |
636 |
Q |
| |
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||||| |||||| ||||||| |||||||||||||||||| | ||| || |||||| | ||||||| ||||||||||||| ||||| || ||||||||| |
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| T |
39398737 |
atatccccgctctaaataaaattctttatcatcttggttaggttgctgcagaagattggtaggccaaagataaacatgaaacgagtaaagtaacatacta |
39398836 |
T |
|
| Q |
637 |
tttatcacagaattgacaagttgtactctccccattatagataacagcaagcctttccaaa |
697 |
Q |
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| ||||| |||||||| || || |||| |||||||||||||||| ||||||||||||| |
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| T |
39398837 |
ctaatcaccgaattgaccagctgaactcgtcccattatagataacaataagcctttccaaa |
39398897 |
T |
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