View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18299_low_3 (Length: 722)

Name: NF18299_low_3
Description: NF18299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18299_low_3
NF18299_low_3
[»] chr5 (3 HSPs)
chr5 (1-682)||(3522450-3523127)
chr5 (561-671)||(26449072-26449190)
chr5 (620-657)||(39466671-39466708)
[»] chr8 (1 HSPs)
chr8 (570-677)||(32897622-32897737)
[»] chr2 (1 HSPs)
chr2 (619-675)||(29463290-29463346)
[»] chr1 (1 HSPs)
chr1 (620-680)||(42471273-42471333)
[»] scaffold0474 (1 HSPs)
scaffold0474 (620-676)||(11330-11386)
[»] chr7 (2 HSPs)
chr7 (570-616)||(42078145-42078191)
chr7 (615-676)||(28109304-28109365)
[»] chr4 (2 HSPs)
chr4 (570-672)||(26619934-26620044)
chr4 (618-671)||(34667161-34667214)
[»] scaffold0377 (1 HSPs)
scaffold0377 (561-616)||(11935-11990)
[»] chr3 (1 HSPs)
chr3 (561-616)||(40417622-40417677)


Alignment Details
Target: chr5 (Bit Score: 547; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 682
Target Start/End: Complemental strand, 3523127 - 3522450
Alignment:
Q  1 tcaaaaactagttcggttctcaactcagaaggttcatgacttcatcttccatcgactataagacaagaggtcttcatgtatttttctaaacctttctctt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3523127 tcaaaaactagttcggttctcaaatcagaaggttcatgacttcatctttcatcgactataagacaagaggtcttcatgtatttttctaaacctttctctt 3523028  T
Q  101 atgtcaactgagaaatacctacttttgacatagtaatctttgcttctttgaatgaggttcaaaatactcttctttcnnnnnnntcttggacgaggaaatc 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||    
T  3523027 atgtcaactgagaaatacctacttttgacatagtagtctttgcttctttgaatgaggttcaaaatactcttctttcaaaaaaatcttggaggaggaaatc 3522928  T
Q  201 ttcaaggtagtccatatataattccaaaggaaacaaaagttcaggcccgaatggtttcaactgtgaattttttaagcctcttttgaggtctcctcaaggt 300  Q
     ||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3522927 atcaaggtagtcc----ataattccaaaggaaacaaaagttcaggcccgaatggtttcaactgtgaattttttaagccttttttgaggtctcctcaaggt 3522832  T
Q  301 ggaaagtgttggtaatgttcgaccaattcaatcaaaatgaatgtcttccaaactatttttccttctannnnnnncctctcattccaaaggtccttgcttc 400  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  3522831 ggaaagtgttggtaatgttggatcaattcaatcaaaatgaatgtcttccaaactatttttccttctatttttttactctcattccaaaggtccttgcttc 3522732  T
Q  401 tcactctcggtcgattaaagaattgattcccaatttgatttaactaaaacacacataattaggatatgaattttctgttcacaatcaatttcaattggct 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3522731 tcactctcggtcgattaaagaattgattcccaatttgatttaactaaaacacacataattaggatatgaattttctgttcccaatcaatttcaattggct 3522632  T
Q  501 tttgcacacggtggagatggcagtgttgttaattttttcttatcataataagtgtgtacccaaagacacgataggataaaataatgttatcatctttctt 600  Q
     ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||    
T  3522631 gttgcacacggtggaggtggcagcgttgttaattttttcttatcataataagtgtgtatccaaacacacgataggataaaataatgttatcatctttttt 3522532  T
Q  601 atcatgcatgcaccaataggataaatgtctatcatgttactatcatatcatatctttatctattttctaattatatcatgtc 682  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3522531 atcatgcgtgcaccaataggataaatgtttatcatgttactatcatattatatctttatctattttctaattatatcatgtc 3522450  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 561 - 671
Target Start/End: Original strand, 26449072 - 26449190
Alignment:
Q  561 caaagacacgataggataaaataatgttatcatctttcttatcatgcatgcaccaa--------taggataaatgtctatcatgttactatcatatcata 652  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||||   ||||||||        |||||||| |||||||||||| ||||||||||||||    
T  26449072 caaacacatgataggataaaataatgatatcatctttcttatcatatgtgcaccaaaagcatgataggataagtgtctatcatgtcactatcatatcata 26449171  T
Q  653 tctttatctattttctaat 671  Q
    | |||||| ||||||||||    
T  26449172 tttttatccattttctaat 26449190  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 657
Target Start/End: Original strand, 39466671 - 39466708
Alignment:
Q  620 gataaatgtctatcatgttactatcatatcatatcttt 657  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  39466671 gataaatgtatatcctgttactatcatatcatatcttt 39466708  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 570 - 677
Target Start/End: Original strand, 32897622 - 32897737
Alignment:
Q  570 gataggataaaataatgttatcatctttcttatcatgcatgcaccaa--------taggataaatgtctatcatgttactatcatatcatatctttatct 661  Q
    |||||||||||| ||||||||| |||||||||||||   ||||||||        ||||||||||||||||||||| |||||| ||||||||||| |||     
T  32897622 gataggataaaaaaatgttatcctctttcttatcatatctgcaccaaacgtatgataggataaatgtctatcatgtcactatcctatcatatcttgatcc 32897721  T
Q  662 attttctaattatatc 677  Q
    |||||||||| |||||    
T  32897722 attttctaatcatatc 32897737  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 619 - 675
Target Start/End: Original strand, 29463290 - 29463346
Alignment:
Q  619 ggataaatgtctatcatgttactatcatatcatatctttatctattttctaattata 675  Q
    |||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||    
T  29463290 ggataaatgtttatcatgtcactatcatatcttatcttcatctattttctaattata 29463346  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 620 - 680
Target Start/End: Complemental strand, 42471333 - 42471273
Alignment:
Q  620 gataaatgtctatcatgttactatcatatcatatctttatctattttctaattatatcatg 680  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||||||  |||||||    
T  42471333 gataaatgtctatcatatcattatcatatcatatctttatctattttctaatcctatcatg 42471273  T

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Target: scaffold0474 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 676
Target Start/End: Original strand, 11330 - 11386
Alignment:
Q  620 gataaatgtctatcatgttactatcatatcatatctttatctattttctaattatat 676  Q
    ||||||||| |||||||| |||||||||  ||||||||||| |||||||||||||||    
T  11330 gataaatgtttatcatgtcactatcatactatatctttatcaattttctaattatat 11386  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 616
Target Start/End: Original strand, 42078145 - 42078191
Alignment:
Q  570 gataggataaaataatgttatcatctttcttatcatgcatgcaccaa 616  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||    
T  42078145 gatatgataaaataatgttatcatatttcttatcatgcgtgcaccaa 42078191  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 676
Target Start/End: Original strand, 28109304 - 28109365
Alignment:
Q  615 aataggataaatgtctatcatgttactatcatatcatatctttatctattttctaattatat 676  Q
    |||| ||||||||| ||| | |||||||||||||| |||||||||| | ||||| |||||||    
T  28109304 aatatgataaatgtttattacgttactatcatatcttatctttatccagtttcttattatat 28109365  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 570 - 672
Target Start/End: Complemental strand, 26620044 - 26619934
Alignment:
Q  570 gataggataaaataatgttatcatctttcttatcatgcatgcaccaat--------aggataaatgtctatcatgttactatcatatcatatctttatct 661  Q
    |||| |||||||||||| |||||| ||| |||||||||||||| |||         |||||||||||||||||||||| ||||||||| |||  ||||      
T  26620044 gataagataaaataatgctatcatattttttatcatgcatgcatcaaatgcatgaaaggataaatgtctatcatgttattatcatatcctattcttattc 26619945  T
Q  662 attttctaatt 672  Q
    |||||||||||    
T  26619944 attttctaatt 26619934  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 671
Target Start/End: Original strand, 34667161 - 34667214
Alignment:
Q  618 aggataaatgtctatcatgttactatcatatcatatctttatctattttctaat 671  Q
    ||||||||| | |||||||| ||||||||||| |||||||||| ||||| ||||    
T  34667161 aggataaatatttatcatgtcactatcatatcctatctttatccattttttaat 34667214  T

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Target: scaffold0377 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 616
Target Start/End: Original strand, 11935 - 11990
Alignment:
Q  561 caaagacacgataggataaaataatgttatcatctttcttatcatgcatgcaccaa 616  Q
    |||| ||| |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  11935 caaaaacatgatatgataaaataatgttatcatatttcctatcatgcgtgcaccaa 11990  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 616
Target Start/End: Original strand, 40417622 - 40417677
Alignment:
Q  561 caaagacacgataggataaaataatgttatcatctttcttatcatgcatgcaccaa 616  Q
    |||| ||| |||| |||||||||||| |||||| ||||||||||||| ||||||||    
T  40417622 caaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaa 40417677  T

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