View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18299_low_4 (Length: 475)
Name: NF18299_low_4
Description: NF18299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18299_low_4 |
 | |
|
| [»] scaffold0240 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 457
Target Start/End: Complemental strand, 27180096 - 27179652
Alignment:
| Q |
14 |
aatactacataaaagggaggaatgtgctacttactgaagctc----cttcccaagcttcttgggtagtgaaaaa--gtctttgatacggcaaataatttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27180096 |
aatactacataaaagggaggaatgtgctacttactgaagctcgctccttctcaggcttcatgggtagtgaaaaaaagtctttgatacggcaaataatttt |
27179997 |
T |
|
| Q |
108 |
gcaagtgcttacggtaatattcatcaacaaccaaacttttctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaa |
207 |
Q |
| |
|
|||||| |||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
27179996 |
gcaagtacttatggtaatgttcttcaacaaccaaacttttctattaagaaaatgtataatgtc----gaggagattttacaaaagtttgttggaggaaaa |
27179901 |
T |
|
| Q |
208 |
tgatttgcaataaccctgctcctccaaaatgtttgtttggtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtat |
307 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27179900 |
tgatttgcaataaccctgcccctccaaaatgtttgtttggttcttggttagctattcatgctagattaccaacttgtgacaggttaaataaagttggtat |
27179801 |
T |
|
| Q |
308 |
ctattgtgaccaattgtgtgttttgtgtaaaaaagagagtgaaattcattctcaccttttcttcaagtgtgaatattttgaagctgtttggaaaggtatc |
407 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27179800 |
ct-ttgtgaccaattgtgtattttgtgtaaaaaagagagtgaaattcattctcaccttttcttcaagtgtgaatattttgaagctgtttggaaacgtatc |
27179702 |
T |
|
| Q |
408 |
ttgcaatggagtaatattagcattaatactagcaactagcagttagtgat |
457 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27179701 |
ttgcaatggagtaatgttagcattaatactagcaactagcagttagtgat |
27179652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 210 - 442
Target Start/End: Original strand, 13942321 - 13942553
Alignment:
| Q |
210 |
atttgcaataaccctgctcctccaaaatgtttgtttggtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtatct |
309 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| | |||||| ||||||||||||| |
|
|
| T |
13942321 |
atttgcaataacactgcccctccaaaatgtttgtttggtacttggttatctattcataccagattaccaacttgtgacaagttaaacaaagttggtatct |
13942420 |
T |
|
| Q |
310 |
attgtgaccaattgtgtgttttgtgtaaaaaagagagtgaaattcattctcaccttttcttcaagtgtgaatattttgaagctgtttggaaaggtatctt |
409 |
Q |
| |
|
|||||||||||||| || | |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
13942421 |
attgtgaccaattgcgtatcttgtgtcaaaaagagaatgaaactcattctcaccttttcttcaagtgtgaatattctgaagctgtttggacaggtatcga |
13942520 |
T |
|
| Q |
410 |
gcaatggagtaatattagcattaatactagcaa |
442 |
Q |
| |
|
||||||||||||| | || |||||||||||||| |
|
|
| T |
13942521 |
gcaatggagtaatgtaagtattaatactagcaa |
13942553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 13941064 - 13941261
Alignment:
| Q |
14 |
aatactacataaaagggaggaatgtgctacttactgaagctccttcccaagcttcttgggtagtgaaaa-agtctttgatacggcaaataattttgcaag |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||| || || |||| ||||||||||| |
|
|
| T |
13941064 |
aatactacataaaagggagaaatgtgctacttattgaagctttttcccaagcttcatgggtagtgaaaaaagtctttcatgcgacaaagaattttgcaag |
13941163 |
T |
|
| Q |
113 |
tgcttacggtaatattcatcaacaaccaaacttttctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatga |
210 |
Q |
| |
|
|| ||| || ||||| | |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
13941164 |
tggttatgggaatatccttcaacaaccatacttttctattaagaaaatgtacaatgccttgagaggagattttacaaaagttggttggaggaaaatga |
13941261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 147 - 284
Target Start/End: Original strand, 7279901 - 7280038
Alignment:
| Q |
147 |
tctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttg |
246 |
Q |
| |
|
|||||||||| ||||||||||| | || || || ||| |||| || |||||||||||||||| || ||||| || || ||||||||||||||||||| |
|
|
| T |
7279901 |
tctattaagagaatgtataatgctataagcggtgactttgcaaaggttggttggaggaaaatgatatgtaataatccagcccctccaaaatgtttgtttg |
7280000 |
T |
|
| Q |
247 |
gtacttggttagctattcatgctagattaccaacttgt |
284 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
7280001 |
ttacttggttaattattcatgctagattgccaacttgt |
7280038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 364
Target Start/End: Complemental strand, 41093529 - 41093393
Alignment:
| Q |
228 |
cctccaaaatgtttgtttggtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtatctattgtgaccaattgtgtg |
327 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||||||||||||| ||||||||||| || | |||||| |||||| | ||||||||| | || |
|
|
| T |
41093529 |
cctccaaaatgtctgtttgttacttggttgattattcatgctagattgccaacttgtgatagtatgcttaaagtaggtatccaatgtgaccaagtttgca |
41093430 |
T |
|
| Q |
328 |
ttttgtgtaaaaaagagagtgaaattcattctcacct |
364 |
Q |
| |
|
||||||||| ||| |||| ||||| |||||||||||| |
|
|
| T |
41093429 |
ttttgtgtacaaatgagaatgaaactcattctcacct |
41093393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 193 - 292
Target Start/End: Complemental strand, 39790342 - 39790243
Alignment:
| Q |
193 |
ttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttggtacttggttagctattcatgctagattaccaacttgtgagaggtt |
292 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||| || ||| | ||||| ||| |||||||||||||| ||| ||||| |
|
|
| T |
39790342 |
ttagttggaggaaaatgacatataataaccctgctcctccaaaatgtttgtttgttatctggctggctatatatggtagattaccaacttatgataggtt |
39790243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 33648436 - 33648492
Alignment:
| Q |
251 |
ttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtat |
307 |
Q |
| |
|
||||||||||||||||| ||||||||| | |||||| ||||| || ||||||||||| |
|
|
| T |
33648436 |
ttggttagctattcatgatagattacctatttgtgataggttgaacaaagttggtat |
33648492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 39045459 - 39045383
Alignment:
| Q |
196 |
gttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttggtacttggttagctattcatgctaga |
272 |
Q |
| |
|
||||| |||||||||| || ||||| | || ||||||||||||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
39045459 |
gttgggggaaaatgatatgtaataatcaagcccctccaaaatgtttgtttgttacttggttaattattcattctaga |
39045383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 457
Target Start/End: Original strand, 5673535 - 5673957
Alignment:
| Q |
14 |
aatactacataaaagggaggaatgtgctacttactgaagctccttcccaagcttcttgggtagtgaaaaagtctttgatacggcaaataattttgcaagt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||| ||||||| |||||| | ||||||||| |
|
|
| T |
5673535 |
aatactacataaaagggaggaatgtgctacttattgaagctccttcccaagtttcatgg-tagtgaaaaa-tctttgacggggcaaagagatttgcaagt |
5673632 |
T |
|
| Q |
114 |
gcttacggtaatattcatcaacaaccaaacttttctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgattt |
213 |
Q |
| |
|
||||| || ||||| | | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
5673633 |
gcttatggaaatatcctttaacaaccaaacttttctattaagaaaatgtataatgccttgagaggagattttaaaaaagttatttggaggaaaatgattt |
5673732 |
T |
|
| Q |
214 |
gcaataaccctgctcctccaaaatgtttgtttggtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtatctattg |
313 |
Q |
| |
|
||||||||| | | ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
5673733 |
gcaataaccttacccctccaaaatgttcgtttggtacttggttaactattcatgttagattaccaacttgtgacaagttaaacaaagttggtatcta--- |
5673829 |
T |
|
| Q |
314 |
tgaccaattgtgtgttttgtgtaaaaaagagagtgaaattcattctcaccttttcttcaagtgtgaatattttgaagctgtttggaaaggtatcttgcaa |
413 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||| |
|
|
| T |
5673830 |
----------------ttgtgtaaaaaagaggatgacacaaattctcaccttttcttcaagtgtgaatatcctaaagttgtttggataggtatcttgcat |
5673913 |
T |
|
| Q |
414 |
tggagtaatattagcattaatactagcaactagcagttagtgat |
457 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
5673914 |
tggagtaatgttagcattactaccagcaactggcagttagtgat |
5673957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 147 - 364
Target Start/End: Complemental strand, 3938514 - 3938297
Alignment:
| Q |
147 |
tctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttg |
246 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| || ||| |||| || |||||||||||||||| || ||||| || || |||||||||||| |||||| |
|
|
| T |
3938514 |
tctattaagagaatgtataatgctttaagaggtgactttgcaaaggttggttggaggaaaatgatatgtaataatccagcccctccaaaatgtctgtttg |
3938415 |
T |
|
| Q |
247 |
gtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtatctattgtgaccaattgtgtgttttgtgtaaaaaagagag |
346 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| ||| | |||||| |||||| | ||||||||| | || ||||||||| ||| |||| |
|
|
| T |
3938414 |
ttacttggttgattattcatgctagattgccaacttgtgataggatgcttaaagtaggtatccaatgtgaccaagtttgcattttgtgtacaaaggagaa |
3938315 |
T |
|
| Q |
347 |
tgaaattcattctcacct |
364 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
3938314 |
tgaaactcattctcacct |
3938297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 147 - 404
Target Start/End: Original strand, 45066595 - 45066852
Alignment:
| Q |
147 |
tctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttg |
246 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| || ||| |||| || |||||||||||||||| || ||||| || || ||||||||||| |||||| |
|
|
| T |
45066595 |
tctattaagagaatgtataatgctttaagaggtgactttgcaaaggttggttggaggaaaatgatatgtaataatccagcccctccaaaatgaatgtttg |
45066694 |
T |
|
| Q |
247 |
gtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtatctattgtgaccaattgtgtgttttgtgtaaaaaagagag |
346 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| ||| | |||||| |||||| | ||||| ||| | || ||||||||| ||| |||| |
|
|
| T |
45066695 |
ttacttggttgattattcatgctagattgccaacttgtgataggatgcttaaagtaggtatccaatgtgatcaagtttgaattttgtgtacaaaggagaa |
45066794 |
T |
|
| Q |
347 |
tgaaattcattctcaccttttcttcaagtgtgaatattttgaagctgtttggaaaggt |
404 |
Q |
| |
|
||||| |||||||||||| || || ||||| ||| |||| ||||||||||||||| |
|
|
| T |
45066795 |
tgaaactcattctcacctctttttttcttgtgattatgttgatgctgtttggaaaggt |
45066852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 292
Target Start/End: Complemental strand, 31929462 - 31929348
Alignment:
| Q |
174 |
agaggagattttacaaaatttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttggtacttggttagctattcatgctagat |
273 |
Q |
| |
|
||||| |||||| | ||| |||||||||||||||||| | |||||||||| |||||||||||||||||| ||||||| | ||||| |||| ||||| |
|
|
| T |
31929462 |
agaggtgatttttccaaagttagttggaggaaaatgacatacaataaccctactcctccaaaatgtttgt----tacttggctggctatacatggtagat |
31929367 |
T |
|
| Q |
274 |
taccaacttgtgagaggtt |
292 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
31929366 |
taccaacttgtgataggtt |
31929348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 384
Target Start/End: Complemental strand, 47160287 - 47160197
Alignment:
| Q |
294 |
aataaagttggtatctattgtgaccaattgtgtgttttgtgtaaaaaagagagtgaaattcattctcaccttttcttcaagtgtgaatatt |
384 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||||||||||| |||| ||||||||||||||| || || ||||| ||||| |||| |
|
|
| T |
47160287 |
aataaagttggtatacattgggaccaattgtgtattttgtgtaaaaaggagaatgaaattcattctcatctctttttcaattgtgagtatt |
47160197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 47160369 - 47160301
Alignment:
| Q |
193 |
ttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttggtacttggttagctat |
262 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||||||||| |||| ||| || ||||||| |||| |
|
|
| T |
47160369 |
ttagttggaggaaaatgatttgcgataa-ccagctcctccaaaatatttgcttgttaattggttatctat |
47160301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 39880223 - 39880270
Alignment:
| Q |
237 |
tgtttgtttggtacttggttagctattcatgctagattaccaacttgt |
284 |
Q |
| |
|
|||||||||| || |||||||||||| |||||| |||||||||||||| |
|
|
| T |
39880223 |
tgtttgtttgttaattggttagctatacatgctcgattaccaacttgt |
39880270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 14 - 457
Target Start/End: Original strand, 38670214 - 38670659
Alignment:
| Q |
14 |
aatactacataaaagggaggaatgtgctacttactgaagctccttcccaagcttcttgggtagtgaaaaa-gtctttgatacggcaaataattttgcaag |
112 |
Q |
| |
|
||||||||||||||||||| ||| || | || |||| |||| | |||||||| || |||| ||||| ||||||||| | | || |||||||| || |
|
|
| T |
38670214 |
aatactacataaaagggagaaatatgttgtctatcgaagttcctccacaagcttcatgaatagtaaaaaatgtctttgatgcaactaagaattttgccag |
38670313 |
T |
|
| Q |
113 |
tgcttacggtaatattcatcaa-caaccaaacttttctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgat |
211 |
Q |
| |
|
||| || | |||| ||| |||| |||||||||||||||||||||||||| ||||| ||| |||| || ||| ||||| ||| ||||||||||||||| |
|
|
| T |
38670314 |
tgcctatgataatgttcttcaaacaaccaaacttttctattaagaaaataaataatatctgaagagttgagtttgcaaaagttaattggaggaaaatgat |
38670413 |
T |
|
| Q |
212 |
ttgcaataaccctgctcctccaaaatgtttgtttggtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtatctat |
311 |
Q |
| |
|
|||||| |||| || ||||||||||||||||||| || |||||| ||||||||||| ||||| | ||||||||| ||||| |||| ||||||||| || |
|
|
| T |
38670414 |
ttgcaacaaccatgtccctccaaaatgtttgtttgttaattggttcgctattcatgcaagattgcaaacttgtgacaggttgaatatagttggtatataa |
38670513 |
T |
|
| Q |
312 |
tgtgaccaattgtgtgttttgtgtaaaaaagagagtgaaattcattctcaccttttcttcaagtgtgaatattttgaagctgtttggaaaggtatcttgc |
411 |
Q |
| |
|
|| |||||||||| ||||||| ||||||| |||| ||||| ||||||| ||||||||||||||||||| |||| ||| | |||||||| | ||||| ||| |
|
|
| T |
38670514 |
tgagaccaattgtatgttttgggtaaaaaggagaatgaaactcattcttaccttttcttcaagtgtgagtattctgatgttgtttggacatgtatcatgc |
38670613 |
T |
|
| Q |
412 |
aatggagtaatattagcattaatactagcaactagcagttagtgat |
457 |
Q |
| |
|
||| |||||| || ||||||||||||||||| | |||||||||||| |
|
|
| T |
38670614 |
aatagagtaacataagcattaatactagcaattggcagttagtgat |
38670659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 311 - 457
Target Start/End: Complemental strand, 2143502 - 2143356
Alignment:
| Q |
311 |
ttgtgaccaattgtgtgttttgtgtaaaaaagagagtgaaattcattctcaccttttcttcaagtgtgaatattttgaagctgtttggaaaggtatcttg |
410 |
Q |
| |
|
|||||||||||| || | ||| ||||| |||||| ||||| | |||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| |
|
|
| T |
2143502 |
ttgtgaccaattatgcatcttgcgtaaagaagagaatgaaacttattctcaccttttcttcaagtgtgaatattttgaagctatttggacaggtatattg |
2143403 |
T |
|
| Q |
411 |
caatggagtaatattagcattaatactagcaactagcagttagtgat |
457 |
Q |
| |
|
||| |||||| | ||||||||||||||||||||| |||| |||||| |
|
|
| T |
2143402 |
caacggagtactgttagcattaatactagcaactgacagtcagtgat |
2143356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 50716151 - 50716058
Alignment:
| Q |
193 |
ttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttggtacttggttagctattcatgctagattaccaacttgtga |
286 |
Q |
| |
|
||||| |||||||||||| || ||||||| ||||||| |||| |||||||||| ||||| || |||| || |||||||||||||||||| |
|
|
| T |
50716151 |
ttagtcggaggaaaatgacatgtaataaccttgctccttcaaattgtttgtttgtgtcttggctatctatatgtggtagattaccaacttgtga |
50716058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 259 - 457
Target Start/End: Original strand, 3659845 - 3660043
Alignment:
| Q |
259 |
ctattcatgctagattaccaacttgtgagaggttaaataaagttggtatctattgtgaccaattgtgtgttttgtgtaaaaaagagagtgaaattcattc |
358 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| | | || ||||||||||||| ||||| |||||| |
|
|
| T |
3659845 |
ctattcatactagattaccaacttgtgactggttaaacaaagttggtatctattatgaccaattgtatatcttctgtaaaaaagagaatgaaactcattc |
3659944 |
T |
|
| Q |
359 |
tcaccttttcttcaagtgtgaatattttgaagctgtttggaaaggtatcttgcaatggagtaatattagcattaatactagcaactagcagttagtgat |
457 |
Q |
| |
|
||| |||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||| ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
3659945 |
tcaacttttcttcaagtgtgaatattctgaagttgtttggacaggtatcttgcaatggaataatgttagcattaatactaacaactgacagttagtgat |
3660043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 131 - 438
Target Start/End: Complemental strand, 24318826 - 24318521
Alignment:
| Q |
131 |
tcaacaaccaaacttttctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgatttgcaataaccctgctcct |
230 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||| ||| ||||||| || |||||||||||||||||||| | |||| |
|
|
| T |
24318826 |
tcaacaatcaaacttttctatcaagaaaatgtataatgtcttaagaggtgattttgtaaaggttagttgaagaaaaatgatttgcaataacccagttcct |
24318727 |
T |
|
| Q |
231 |
ccaaaatgtttgtttggtacttggttagctattcatgct--agattaccaacttgtgagaggttaaataaagttggtatctattgtgaccaattgtgtgt |
328 |
Q |
| |
|
|| |||||||||||| || |||||||||||| |||||| ||||| |||| |||||| | ||| | ||||||||||| |||||||| ||||||| | |
|
|
| T |
24318726 |
cc-aaatgtttgtttattaattggttagctatacatgctagagattgccaaattgtgataagttggacaaagttggtatacgttgtgaccgattgtgtat |
24318628 |
T |
|
| Q |
329 |
tttgtgtaaaaaagagagtgaaattcattctcaccttttcttcaagtgtgaatattttgaagctgtttggaaaggtatcttgcaatggagtaatattagc |
428 |
Q |
| |
|
||||||| ||||||| ||||| ||| ||||||||||||||| | || || |||| ||| | |||||| | | |||| |||||||||||||| || ||| |
|
|
| T |
24318627 |
tttgtgt---aaagagaatgaaactcactctcaccttttcttccattgcgagtattctgatgttgtttgaacatgtattttgcaatggagtaacataagc |
24318531 |
T |
|
| Q |
429 |
attaatacta |
438 |
Q |
| |
|
|||||||||| |
|
|
| T |
24318530 |
attaatacta |
24318521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 131 - 370
Target Start/End: Original strand, 1161219 - 1161458
Alignment:
| Q |
131 |
tcaacaaccaaacttttctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgatttgcaataaccctgctcct |
230 |
Q |
| |
|
||||||| | ||||| |||||||| ||||||||||| || ||||| |||||| ||| | || |||| |||||||| || ||||||||||| ||| |
|
|
| T |
1161219 |
tcaacaagctaacttcgctattaagcgaatgtataatgctttaagaggtgattttgtcaaagtgagctggatgaaaatgacatgtaataaccctgcccct |
1161318 |
T |
|
| Q |
231 |
ccaaaatgtttgtttggtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtatctattgtgaccaattgtgtgttt |
330 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||| |||||| ||||||| ||| || || ||||||||||| ||||||||| ||||| ||| ||| |
|
|
| T |
1161319 |
ccaaaatgtttgtttgttacttggctagctattcatggtagattgccaacttatgaaagattgaataaagttggaatctattgtaaccaaacgtgcattt |
1161418 |
T |
|
| Q |
331 |
tgtgtaaaaaagagagtgaaattcattctcaccttttctt |
370 |
Q |
| |
|
| ||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
1161419 |
tatgtaaaaaagagaatgaaacacattctcaccttttctt |
1161458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 319
Target Start/End: Complemental strand, 35164558 - 35164435
Alignment:
| Q |
196 |
gttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttggtacttggttagctattcatgctagattaccaacttgtgagaggttaaa |
295 |
Q |
| |
|
|||||||||||||||| || ||||| | || |||| ||||||||||| | |||||||||| |||||||||||||| | ||||||||| ||| | |
|
|
| T |
35164558 |
gttggaggaaaatgatatgtaataattcagcctctccgaaatgtttgttcgctacttggttaatcattcatgctagattgctaacttgtgataggatgct |
35164459 |
T |
|
| Q |
296 |
taaagttggtatctattgtgacca |
319 |
Q |
| |
|
|||||| |||||| | |||||||| |
|
|
| T |
35164458 |
taaagtaggtatccaatgtgacca |
35164435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 132 - 348
Target Start/End: Original strand, 11814917 - 11815129
Alignment:
| Q |
132 |
caacaaccaaacttttctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgatttgcaataaccctgctcctc |
231 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||| | ||||| ||| |||| |
|
|
| T |
11814917 |
caacaaccaaacttttctatcaaga---tgtataatgtcttaagaggtgattttgcaaaagctagttggaggaaaatgatttgaagtaacc-tgcccctc |
11815012 |
T |
|
| Q |
232 |
caaaatgtttgtttggtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtatctattgtgaccaattgtgtgtttt |
331 |
Q |
| |
|
|| |||||||||||| || ||||||| |||||| | ||||||| ||||||||||||||||| || || |||||||| |||||||| |||||||| |||| |
|
|
| T |
11815013 |
cataatgtttgtttgttaattggttaactattctttctagattgccaacttgtgagaggttgaacaaggttggtatacattgtgactaattgtgtatttt |
11815112 |
T |
|
| Q |
332 |
gtgtaaaaaagagagtg |
348 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
11815113 |
gtgtaaaaaggagagtg |
11815129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 193 - 372
Target Start/End: Original strand, 6839530 - 6839709
Alignment:
| Q |
193 |
ttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttggtacttggttagctattcatgctagattaccaacttgtgagaggtt |
292 |
Q |
| |
|
|||||||||||||| ||| || ||||||| |||||||||||||| ||| |||| ||||||| | ||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
6839530 |
ttagttggaggaaattgacatgtaataaccatgctcctccaaaatatttatttgttacttggctggctatacatgatagattaccaacttgtgataggtt |
6839629 |
T |
|
| Q |
293 |
aaataaagttggtatctattgtgaccaattgtgtgttttgtgtaaaaaagagagtgaaattcattctcaccttttcttca |
372 |
Q |
| |
|
| |||| ||| || | |||| ||||||||| |||||| |||||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
6839630 |
gagtaaatttgagatacaatgtgcccaattgtgcactttgtgcaaaaaagagaatgaaactcattctcatcttttcttca |
6839709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 384
Target Start/End: Complemental strand, 38276788 - 38276668
Alignment:
| Q |
264 |
catgctagattaccaacttgtgagaggttaaataaagttggtatctattgtgaccaattgtgtgttttgtgtaaaaaagagagtgaaattcattctcacc |
363 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||||||||| | ||||| ||||||||| ||||| |||| || || | ||||| ||||||||||| |
|
|
| T |
38276788 |
catgctagattaccaacttgtgtctcgttgaacaaagttggtataaaatgtgatcaattgtgtattttgggtaagaaggataatgaaactcattctcacc |
38276689 |
T |
|
| Q |
364 |
ttttcttcaagtgtgaatatt |
384 |
Q |
| |
|
||||||| || ||||| |||| |
|
|
| T |
38276688 |
ttttcttaaattgtgagtatt |
38276668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 38277009 - 38276818
Alignment:
| Q |
19 |
tacataaaagggaggaatgtgctacttactgaagctccttcccaagcttcttgggtagtgaaaaa-gtctttgatacggcaaataattttgcaagtgctt |
117 |
Q |
| |
|
||||| ||||| || ||||| ||||||| ||||| |||||| ||||||| || |||| ||||| ||||||||| || || |||||||||| ||| |
|
|
| T |
38277009 |
tacattaaaggaagaaatgtactacttattgaagttccttcagaagcttcatgtatagtaaaaaaagtctttgatgtagccaagaattttgcaaatgcca |
38276910 |
T |
|
| Q |
118 |
acggtaatattcatcaacaaccaaacttttctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatg |
209 |
Q |
| |
|
| ||||| || ||||||| |||| |||||||| |||||||||||| ||||||| ||||| |||||| |||| |||||| ||| |||||| |
|
|
| T |
38276909 |
atagtaatgttgctcaacaatcaaatttttctataaagaaaatgtatgatgtcttaagaggtgattttttaaaagttagttagagaaaaatg |
38276818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 370
Target Start/End: Complemental strand, 7478336 - 7478173
Alignment:
| Q |
207 |
atgatttgcaataaccctgctcctccaaaatgtttgtttggtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggta |
306 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||| || |||| |||||||||||| |||||| ||||||||||| | || ||||||||||| | |
|
|
| T |
7478336 |
atgatatgtaataaccctgctcctccaaaatgtttgtttgttatttggctagctattcatggtagattgccaacttgtgaaatattgaataaagttggaa |
7478237 |
T |
|
| Q |
307 |
tctattgtgaccaattgtgtgttttgtgtaaaaaagagagtgaaattcattctcaccttttctt |
370 |
Q |
| |
|
|||||||| ||||| ||| |||| ||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
7478236 |
tctattgtaaccaaacgtgcattttatgtaaaaaagagaatgaaacacattctcaccttttctt |
7478173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 147 - 364
Target Start/End: Complemental strand, 18261648 - 18261431
Alignment:
| Q |
147 |
tctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttg |
246 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| || |||||||| || |||||||||||||||| || ||||| || || ||||||||||||||||||| |
|
|
| T |
18261648 |
tctattaagagaatgtataatgctttaagaggtgactttacaaaggttggttggaggaaaatgatatgtaataatccagcccctccaaaatgtttgtttg |
18261549 |
T |
|
| Q |
247 |
gtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtatctattgtgaccaattgtgtgttttgtgtaaaaaagagag |
346 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| ||| | |||||| |||||| | ||||||||| | || ||||||||| ||| |||| |
|
|
| T |
18261548 |
ttacttggttgattattcatgctagattgccaacttgtgataggatgcttaaagtaggtatccaatgtgaccaagtttgcattttgtgtacaaaggagaa |
18261449 |
T |
|
| Q |
347 |
tgaaattcattctcacct |
364 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
18261448 |
tgaaactcattctcacct |
18261431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 142 - 439
Target Start/End: Complemental strand, 29456833 - 29456536
Alignment:
| Q |
142 |
acttttctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgttt |
241 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||| |||||| | || || |||||||||||||| || ||||| | |||||||||||| ||||| |
|
|
| T |
29456833 |
acttttctattaagagaatgtataatgacttaagaggtgattttgccaaggttgcttggaggaaaatgacatgtaataatcttgctcctccaaattgttt |
29456734 |
T |
|
| Q |
242 |
gtttggtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtatctattgtgaccaattgtgtgttttgtgtaaaaaa |
341 |
Q |
| |
|
||||| | ||||| ||||||| |||| |||||| ||||||| ||| || |||| |||||||| || | |||| || |||||| |||||| ||||| |
|
|
| T |
29456733 |
gtttgtttcttggctagctatacatggtagattgccaacttatgatagattaagtaaagttgcaatacaatgtgcccctttgtgtactttgtgcaaaaag |
29456634 |
T |
|
| Q |
342 |
gagagtgaaattcattctcaccttttcttcaagtgtgaatattttgaagctgtttggaaaggtatcttgcaatggagtaatattagcattaatactag |
439 |
Q |
| |
|
|||| ||||| ||| ||||| || ||||| | ||||| |||| ||| |||||||||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
29456633 |
gagaatgaaactcactctcatctcttctttacttgtgagtattctgagactgtttggaaaggtgcaacacaatggagtaacatgagcattaatactag |
29456536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 147 - 364
Target Start/End: Complemental strand, 33631730 - 33631511
Alignment:
| Q |
147 |
tctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttg |
246 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| || ||| |||| || |||||||||||||||| || ||||| || || |||||||||||| |||||| |
|
|
| T |
33631730 |
tctattaagagaatgtataatgctttaagaggtgactttgcaaaggttggttggaggaaaatgatatgtaataatccagcccctccaaaatgtctgtttg |
33631631 |
T |
|
| Q |
247 |
gtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtatc--tattgtgaccaattgtgtgttttgtgtaaaaaagag |
344 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| ||| | |||||| |||||| | ||||||||| | || |||||||||| ||| ||| |
|
|
| T |
33631630 |
ttacttggttgattattcatgctagattgccaacttgtgataggatgcttaaagtaggtatccaaaatgtgaccaagtttgcgttttgtgtacaaaggag |
33631531 |
T |
|
| Q |
345 |
agtgaaattcattctcacct |
364 |
Q |
| |
|
| ||||| |||||||||||| |
|
|
| T |
33631530 |
aatgaaactcattctcacct |
33631511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 147 - 364
Target Start/End: Complemental strand, 33623624 - 33623407
Alignment:
| Q |
147 |
tctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttg |
246 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| || ||| |||| || |||||||||||||||| || ||||| || || ||||||||||| |||||| |
|
|
| T |
33623624 |
tctattaagagaatgtataatgctttaagaggtgactttgcaaaggttggttggaggaaaatgatatgtaataatccagcccctccaaaatgaatgtttg |
33623525 |
T |
|
| Q |
247 |
gtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtatctattgtgaccaattgtgtgttttgtgtaaaaaagagag |
346 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| ||| ||| | |||||| |||||| | ||||||||| | || ||||||||| ||| |||| |
|
|
| T |
33623524 |
ttacttggttgattattcatgctagattgccaacttatgataggatgcgtaaagtaggtatccaatgtgaccaagtttgcattttgtgtacaaaggagaa |
33623425 |
T |
|
| Q |
347 |
tgaaattcattctcacct |
364 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
33623424 |
tgaaactcattctcacct |
33623407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 147 - 364
Target Start/End: Original strand, 22163718 - 22163935
Alignment:
| Q |
147 |
tctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttg |
246 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| || ||| |||| || |||||||||||||||| || ||||| || || |||||||||||| ||||| |
|
|
| T |
22163718 |
tctattaagagaatgtataatgctttaagaggtgactttgcaaaggttggttggaggaaaatgatatgtaataatccagcccctccaaaatgtctgttta |
22163817 |
T |
|
| Q |
247 |
gtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtatctattgtgaccaattgtgtgttttgtgtaaaaaagagag |
346 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| ||| | |||||| |||||| | ||||||||| | || ||||||||| ||| |||| |
|
|
| T |
22163818 |
ttacttggttgattattcatgctagattgccaacttgtgataggatgcttaaagtaggtatccaatgtgaccaagtttgcattttgtgtacaaaggagaa |
22163917 |
T |
|
| Q |
347 |
tgaaattcattctcacct |
364 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
22163918 |
tgaaactcattctcacct |
22163935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 147 - 404
Target Start/End: Complemental strand, 3423555 - 3423302
Alignment:
| Q |
147 |
tctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttg |
246 |
Q |
| |
|
||||||| || |||||||||| || ||||| || ||| |||| || |||||||||||||||| ||||| || || |||||||||||| |||||| |
|
|
| T |
3423555 |
tctattaggagaatgtataatactttaagaggtgactttgcaaaggttggttggaggaaaatgat----aataatccagcccctccaaaatgtatgtttg |
3423460 |
T |
|
| Q |
247 |
gtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaagttggtatctattgtgaccaattgtgtgttttgtgtaaaaaagagag |
346 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||||| ||| | |||||| ||||| | ||||||||| | || ||||||||| ||| |||| |
|
|
| T |
3423459 |
ttacttggttgattattcatggtagattgccaacttgtgataggatgcttaaagtaggtattcaatgtgaccaagtttgcattttgtgtacaaaggagaa |
3423360 |
T |
|
| Q |
347 |
tgaaattcattctcaccttttcttcaagtgtgaatattttgaagctgtttggaaaggt |
404 |
Q |
| |
|
||||| |||||||||||| || || ||||| ||| |||| ||||||||||||||| |
|
|
| T |
3423359 |
tgaaactcattctcacctctttttttcttgtgattatgttgatgctgtttggaaaggt |
3423302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 364
Target Start/End: Complemental strand, 43191734 - 43191570
Alignment:
| Q |
200 |
gaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttggtacttggttagctattcatgctagattaccaacttgtgagaggttaaataaa |
299 |
Q |
| |
|
|||||||||||| || ||||| || | ||||| ||||||||||||| ||||||||| |||||||| |||||| ||||||||||| ||| | |||| |
|
|
| T |
43191734 |
gaggaaaatgatatgtaataatccagaccctcctaaatgtttgtttgttacttggttgattattcatgatagattgccaacttgtgataggatgcttaaa |
43191635 |
T |
|
| Q |
300 |
gttggtatctattgtgaccaattgtgtgttttgtgtaaaaaagagagtgaaattcattctcacct |
364 |
Q |
| |
|
|| | ||| | ||||||||| | || ||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
43191634 |
gtagatattcaatgtgaccaagtttgcattttgtgtacaaaggagaatgaaattcattctcacct |
43191570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 384
Target Start/End: Complemental strand, 52662659 - 52662472
Alignment:
| Q |
197 |
ttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttggtacttggttagctattcatgctagattaccaacttgtgagaggttaaat |
296 |
Q |
| |
|
||||||||| |||||||| ||||| | ||| |||||||| |||||||||| |||||||||||||||||| |||||| ||||| || || | || | | |
|
|
| T |
52662659 |
ttggaggaagatgatttgtaataatcatgcccctccaaagtgtttgtttgttacttggttagctattcaatgtagattgccaacgtgagataaattgagt |
52662560 |
T |
|
| Q |
297 |
aaagttggtatctattgtgaccaattgtgtgttttgtgtaaaaaagagagtgaaattcattctcaccttttcttcaagtgtgaatatt |
384 |
Q |
| |
|
||||||| || | ||||||||| || | |||||||||||||||| | ||| ||||||||| || ||||||| |||||||||| |
|
|
| T |
52662559 |
aaagttgaaatacaatgtgaccaaacttgcatcttgtgtaaaaaagagaataaaaatcattctcatctattcttcacttgtgaatatt |
52662472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0240 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0240
Description:
Target: scaffold0240; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 17465 - 17564
Alignment:
| Q |
147 |
tctattaagaaaatgtataatgtcttgagaggagattttacaaaatttagttggaggaaaatgatttgcaataaccctgctcctccaaaatgtttgtttg |
246 |
Q |
| |
|
|||||||| | ||||||||||| || ||||| || ||| |||| || |||||||||||||||| || ||||| || || ||||||||||||||||||| |
|
|
| T |
17465 |
tctattaaaagaatgtataatgctttaagaggtgactttgcaaaggttggttggaggaaaatgatatgtaataatccagcccctccaaaatgtttgtttg |
17564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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