View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1829_high_2 (Length: 365)
Name: NF1829_high_2
Description: NF1829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1829_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 54702110 - 54701770
Alignment:
| Q |
17 |
tatacaaggtttttaatgtgtttaccacaagattttctttgagaccacaagagtgttgaccacttgctctgctttaatcaaccacaaagactctaatgag |
116 |
Q |
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| T |
54702110 |
tatacaagatttttaatgtgttgaccacaagattttctttgagaccacaagagtgttgaccacttgctctgctttaatcaaccacacagactctaatgag |
54702011 |
T |
|
| Q |
117 |
ttaactgtgaaatcttcggcttctttcaagatcgaaaaagtttccatgtctttgtttgcggaagaaaagaaactgtggactcatttttcattgctttcaa |
216 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54702010 |
ttaactgtgacatcttgggcttctttcaagatcgaaaaagtttccatgtctttgtttgcggaagaaaagaaactgtggactcatttttcattgctttcaa |
54701911 |
T |
|
| Q |
217 |
gtttccaagtgcctttgcaatagctttcttcatcttcttcctatatgacaagtattttccttccaccctcaactgtgattccactttccacagctctcct |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54701910 |
gtttccaagtgcctctgcaatagctttcttcatcttcttcctatatgacaagtattttccttccaccctcaactgtgattccactttccacagctctcct |
54701811 |
T |
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| Q |
317 |
cctgagaataactgaccgtagttcatgcatgatatcctttg |
357 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54701810 |
cctgagaataactgaccttagttcatgcatgatatcctttg |
54701770 |
T |
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