View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1829_low_1 (Length: 368)

Name: NF1829_low_1
Description: NF1829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1829_low_1
NF1829_low_1
[»] chr6 (14 HSPs)
chr6 (16-291)||(3110397-3110672)
chr6 (302-368)||(33695329-33695393)
chr6 (302-368)||(33696695-33696759)
chr6 (303-368)||(25986930-25986993)
chr6 (300-368)||(6127272-6127338)
chr6 (301-368)||(18365575-18365640)
chr6 (301-368)||(18370839-18370904)
chr6 (301-368)||(23291086-23291151)
chr6 (301-368)||(28675146-28675211)
chr6 (302-368)||(18889699-18889762)
chr6 (303-368)||(17176023-17176086)
chr6 (303-368)||(17705467-17705530)
chr6 (323-368)||(32702223-32702268)
chr6 (301-368)||(9752247-9752311)
[»] chr8 (22 HSPs)
chr8 (300-368)||(15187557-15187623)
chr8 (301-368)||(32064743-32064808)
chr8 (298-368)||(42755044-42755112)
chr8 (303-368)||(34665382-34665445)
chr8 (301-368)||(17841852-17841917)
chr8 (301-368)||(40780131-40780196)
chr8 (291-368)||(1645967-1646042)
chr8 (303-368)||(20091803-20091866)
chr8 (303-368)||(24211555-24211618)
chr8 (299-368)||(26042118-26042185)
chr8 (303-368)||(32393858-32393921)
chr8 (311-368)||(38016979-38017034)
chr8 (300-368)||(7017867-7017933)
chr8 (301-368)||(6108235-6108300)
chr8 (293-368)||(31347784-31347857)
chr8 (303-368)||(35353041-35353104)
chr8 (323-368)||(7021996-7022041)
chr8 (304-368)||(14128865-14128927)
chr8 (300-368)||(37986057-37986123)
chr8 (301-368)||(39772803-39772868)
chr8 (302-368)||(41819780-41819844)
chr8 (323-368)||(3890427-3890472)
[»] chr3 (21 HSPs)
chr3 (294-368)||(33113784-33113856)
chr3 (303-368)||(3456064-3456127)
chr3 (299-368)||(3574529-3574596)
chr3 (303-368)||(48160905-48160968)
chr3 (301-368)||(2754715-2754780)
chr3 (301-368)||(11347266-11347331)
chr3 (301-368)||(34482912-34482977)
chr3 (303-368)||(6041884-6041947)
chr3 (303-368)||(37217055-37217118)
chr3 (301-368)||(3137416-3137481)
chr3 (303-368)||(8320586-8320649)
chr3 (303-368)||(30385011-30385074)
chr3 (303-368)||(33145713-33145775)
chr3 (323-368)||(19650902-19650947)
chr3 (323-368)||(47738123-47738168)
chr3 (301-368)||(37522051-37522116)
chr3 (302-368)||(36865029-36865093)
chr3 (302-355)||(42297352-42297403)
chr3 (323-368)||(9797031-9797076)
chr3 (323-368)||(22426346-22426391)
chr3 (300-368)||(24343544-24343610)
[»] chr7 (14 HSPs)
chr7 (299-368)||(45637708-45637775)
chr7 (302-368)||(15577852-15577916)
chr7 (303-368)||(4974737-4974800)
chr7 (303-368)||(34482835-34482898)
chr7 (303-368)||(42611811-42611874)
chr7 (301-368)||(15329271-15329336)
chr7 (303-368)||(24394972-24395035)
chr7 (303-368)||(25167852-25167915)
chr7 (303-368)||(48880929-48880992)
chr7 (302-368)||(35444557-35444621)
chr7 (303-368)||(3961979-3962042)
chr7 (300-368)||(37477082-37477148)
chr7 (311-368)||(29737147-29737202)
chr7 (303-355)||(20010112-20010162)
[»] chr5 (15 HSPs)
chr5 (303-368)||(4434009-4434072)
chr5 (300-368)||(6043513-6043579)
chr5 (301-368)||(2477634-2477699)
chr5 (302-368)||(3362777-3362841)
chr5 (302-368)||(38899728-38899792)
chr5 (303-368)||(11361133-11361196)
chr5 (299-368)||(14138664-14138731)
chr5 (323-368)||(8145393-8145438)
chr5 (303-368)||(37321795-37321859)
chr5 (301-368)||(4892200-4892265)
chr5 (303-368)||(12850801-12850864)
chr5 (303-368)||(22913056-22913119)
chr5 (303-368)||(25398238-25398301)
chr5 (303-368)||(33584331-33584394)
chr5 (303-368)||(3522008-3522071)
[»] chr4 (20 HSPs)
chr4 (291-368)||(2624825-2624900)
chr4 (292-368)||(22199250-22199324)
chr4 (301-368)||(10442791-10442856)
chr4 (302-368)||(31078821-31078885)
chr4 (303-368)||(36072947-36073010)
chr4 (303-368)||(49387890-49387953)
chr4 (301-368)||(21802324-21802389)
chr4 (301-368)||(24128237-24128302)
chr4 (301-368)||(47290064-47290129)
chr4 (302-368)||(4751445-4751509)
chr4 (302-368)||(33530690-33530754)
chr4 (303-368)||(46441844-46441907)
chr4 (304-368)||(7745114-7745176)
chr4 (300-368)||(36073347-36073413)
chr4 (301-368)||(24392665-24392730)
chr4 (301-368)||(44893424-44893489)
chr4 (301-368)||(23964467-23964532)
chr4 (301-368)||(50156580-50156645)
chr4 (302-368)||(53123029-53123094)
chr4 (333-368)||(17655458-17655493)
[»] chr2 (13 HSPs)
chr2 (303-368)||(21936081-21936144)
chr2 (301-368)||(13354844-13354909)
chr2 (299-368)||(23268064-23268131)
chr2 (323-368)||(31174836-31174881)
chr2 (301-368)||(9293578-9293643)
chr2 (302-368)||(14941368-14941432)
chr2 (302-368)||(35160756-35160820)
chr2 (304-368)||(10661888-10661950)
chr2 (323-368)||(22591500-22591545)
chr2 (298-368)||(43330907-43330975)
chr2 (302-368)||(7475510-7475574)
chr2 (303-368)||(33380207-33380270)
chr2 (323-368)||(27847650-27847695)
[»] chr1 (14 HSPs)
chr1 (300-368)||(19015401-19015467)
chr1 (292-368)||(36966710-36966784)
chr1 (303-368)||(37821836-37821899)
chr1 (303-368)||(40214988-40215051)
chr1 (301-368)||(16045800-16045865)
chr1 (301-368)||(25463674-25463739)
chr1 (294-368)||(6883478-6883550)
chr1 (303-368)||(9910295-9910358)
chr1 (303-368)||(44094698-44094761)
chr1 (301-368)||(18404440-18404505)
chr1 (301-368)||(3559615-3559680)
chr1 (298-368)||(25973409-25973476)
chr1 (302-368)||(41876444-41876508)
chr1 (303-368)||(32000269-32000332)
[»] scaffold0471 (1 HSPs)
scaffold0471 (301-368)||(12840-12905)
[»] scaffold0096 (1 HSPs)
scaffold0096 (301-368)||(41009-41074)
[»] scaffold0178 (1 HSPs)
scaffold0178 (303-368)||(11621-11684)
[»] scaffold0085 (1 HSPs)
scaffold0085 (303-368)||(47850-47913)
[»] scaffold0228 (3 HSPs)
scaffold0228 (323-368)||(8420-8465)
scaffold0228 (323-368)||(16002-16047)
scaffold0228 (323-368)||(25954-25999)
[»] scaffold0204 (1 HSPs)
scaffold0204 (301-368)||(4394-4459)
[»] scaffold0665 (1 HSPs)
scaffold0665 (299-368)||(3064-3131)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 3110397 - 3110672
Alignment:
Q  16 ataaataaatattgaaaatgattaaaccggttgaaccgatatagcatatacatttgggatgagaaagtcagaggatgtcaatggcagccgtagtgtgtcg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3110397 ataaataaatattgaaaatgattaaaccggttgaaccgatatagcatatacatttgggatgagaaagtcagaggatgtcaatggcagccgtagtgtgtcg 3110496  T
Q  116 gactccgcagaacacggtaactaactgcttctccttcagtcttgggttttcctcccgtgttcttttcacccctcttgtcttcacacaatggaaaagaacc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||    
T  3110497 gactccgcagaacacggtaactaactgcttctccttcagtcttgggttttcctcacgtgttcttttcaacccttttgtcttcacacaatggaaaagaacc 3110596  T
Q  216 ttcactacccatgttctttgtcatgctaaaaaggtatgttccannnnnnngttcttgattatcttcacttattatt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  3110597 ttcactacccatgttctttgtcatgctaaaaaggtatgttccatttttttgttcttgattatcttcacttattatt 3110672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 33695393 - 33695329
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  33695393 agagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 33695329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 33696695 - 33696759
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  33696695 agagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 33696759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 25986930 - 25986993
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||||||||| |||||| |||||    
T  25986930 gagcaatgctatatatcaaga--aagattttattaagaaaatttcaagaatgacatggcaaaataa 25986993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 300 - 368
Target Start/End: Original strand, 6127272 - 6127338
Alignment:
Q  300 taagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||||    
T  6127272 taagagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatggcagaataa 6127338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 18365640 - 18365575
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||||| || |||||||||||||||| ||||||||||||    
T  18365640 aagagcaatgctatatatcaaga--aagattttatcaaaaaaatttcaagaatgacatggcagaataa 18365575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 18370904 - 18370839
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||||| || |||||||||||||||| ||||||||||||    
T  18370904 aagagcaatgctatatatcaaga--aagattttatcaaaaaaatttcaagaatgacatggcagaataa 18370839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 23291151 - 23291086
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||||    
T  23291151 aagagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatggcagaataa 23291086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 28675146 - 28675211
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||| | ||||||    
T  28675146 aagagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatgtcggaataa 28675211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 18889762 - 18889699
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||||||||  ||||||| || ||||||||||||||||||| ||||||||||||    
T  18889762 agagcaatgctatatatcaaga--aagattt-atcaagaaaatttcaagaatgacatggcagaataa 18889699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 17176086 - 17176023
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| || |||||||||||||||| ||| ||||||||    
T  17176086 gagcaatgctatatatcaaga--aagattttatcaataaaatttcaagaatgacatgacagaataa 17176023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 17705530 - 17705467
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||| ||||||||    
T  17705530 gagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatgacagaataa 17705467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 32702223 - 32702268
Alignment:
Q  323 agaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||    
T  32702223 agaaagattttttcatgaaaatttcaagaatgatatggcagaataa 32702268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 9752311 - 9752247
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||  |||||||||||| |||    |||| ||||||| ||||||||||||||||||||||||    
T  9752311 aagagcaatgttatatatcaagaaaaaa---ttatcaagaaaaattcaagaatgatatggcagaataa 9752247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 300 - 368
Target Start/End: Original strand, 15187557 - 15187623
Alignment:
Q  300 taagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||    
T  15187557 taagagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgatatggcagaataa 15187623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 32064743 - 32064808
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  32064743 aagagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 32064808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 368
Target Start/End: Complemental strand, 42755112 - 42755044
Alignment:
Q  298 tataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||||  ||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  42755112 tataagagcaatgatatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 42755044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 34665382 - 34665445
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  34665382 gagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 34665445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 17841917 - 17841852
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||| | ||||||||||||||||||| ||||||||||||    
T  17841917 aagagcaatgctatatatcaaga--aagattttttcaagaaaatttcaagaatgacatggcagaataa 17841852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 40780196 - 40780131
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||| | ||||||||||||||||||| ||||||||||||    
T  40780196 aagagcaatgctatatatcaaga--aagattttttcaagaaaatttcaagaatgacatggcagaataa 40780131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 1646042 - 1645967
Alignment:
Q  291 tattttttataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| | ||||||||| |||||||||||||  |||||||||| |||||||||| ||||| || ||||||||||||    
T  1646042 tatttttaaaaagagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaaagacatggcagaataa 1645967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 20091866 - 20091803
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  || ||||||| ||||||||||||||||||| ||||||||||||    
T  20091866 gagcaatgctatatatcaaga--aatattttatcaagaaaatttcaagaatgacatggcagaataa 20091803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 24211618 - 24211555
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| ||||||||||||||||||  ||||||||||||    
T  24211618 gagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatggcatggcagaataa 24211555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 26042185 - 26042118
Alignment:
Q  299 ataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||| |||||||| ||||  |||||||||| ||||||||||||||||||| ||| ||||||||    
T  26042185 ataagagcaatgctatatattaaga--aagattttatcaagaaaatttcaagaatgacatgacagaataa 26042118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 32393858 - 32393921
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||||    
T  32393858 gagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatggcagaataa 32393921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 38016979 - 38017034
Alignment:
Q  311 ctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  38016979 ctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 38017034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 7017933 - 7017867
Alignment:
Q  300 taagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||| |||||||||| ||  |||||||| ||||||||| ||||||||||| ||||||||||||    
T  7017933 taagagcaatgctatatatcatga--aagattttcttaagaaaaattcaagaatgacatggcagaataa 7017867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 6108300 - 6108235
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||  ||||||||||||  |||||||| |||||||||||| |||||||| ||||||||||||    
T  6108300 aagagcaatgttatatatcaaga--aagatttttttaagaaaattttaagaatgacatggcagaataa 6108235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 368
Target Start/End: Complemental strand, 31347857 - 31347784
Alignment:
Q  293 ttttttataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| ||||||||| |||||||||||||  || ||||| | ||||||| ||||||||||| ||||||||||||    
T  31347857 ttttttaaaagagcaatgctatatatcaaga--aatattttctcaagaaaaattcaagaatgacatggcagaataa 31347784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 35353041 - 35353104
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||| | |||||||||| |||||||| ||||||||||||    
T  35353041 gagcaatgctatatatcaaga--aagattttttcaagaaaattttaagaatgacatggcagaataa 35353104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 7021996 - 7022041
Alignment:
Q  323 agaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||| | ||||||| ||||||||||||||||||||||||    
T  7021996 agaaagattttctcaagaaaaattcaagaatgatatggcagaataa 7022041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 14128865 - 14128927
Alignment:
Q  304 agcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||| |||||||||||||  |||||||||| || ||||||| |||||||| ||||||||||||    
T  14128865 agcaatgctatatatcaaga--aagattttatcaataaaattttaagaatgacatggcagaataa 14128927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 37986123 - 37986057
Alignment:
Q  300 taagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||| ||| |||||||||||||  |||||||||| || ||||||| |||||||| ||||||||||||    
T  37986123 taagagtaatgctatatatcaaga--aagattttatcaaaaaaattttaagaatgacatggcagaataa 37986057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 39772868 - 39772803
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||  ||||||||||||  || ||||||| || |||||||||||||||| ||||||||||||    
T  39772868 aagagcaatgttatatatcaaga--aatattttatcaaaaaaatttcaagaatgacatggcagaataa 39772803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 41819844 - 41819780
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||  ||||||||||||  |||||||||| |||||  ||| |||||||||||||||||||||    
T  41819844 agagcaatgttatatatcaaga--aagattttatcaagaatgttttaagaatgatatggcagaataa 41819780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 3890427 - 3890472
Alignment:
Q  323 agaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||| |||||||| ||||||  ||||||||||||||||||||||||    
T  3890427 agaatgattttatcaagaaagattcaagaatgatatggcagaataa 3890472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 294 - 368
Target Start/End: Original strand, 33113784 - 33113856
Alignment:
Q  294 tttttataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||| |||||||||| |||||||||||||  |||||||||||||||||||||||||||| | ||||||||||||    
T  33113784 tttttttaagagcaatgctatatatcaaga--aagattttattaagaaaatttcaagaattacatggcagaataa 33113856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 3456064 - 3456127
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| |||||||||| |||||||||||||||||||||    
T  3456064 gagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgatatggcagaataa 3456127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 3574596 - 3574529
Alignment:
Q  299 ataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||||    
T  3574596 ataagagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatggcagaataa 3574529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 48160905 - 48160968
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| |||||||||| |||||||||||||||||||||    
T  48160905 gagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgatatggcagaataa 48160968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 2754715 - 2754780
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||||    
T  2754715 aagagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatggcagaataa 2754780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 11347266 - 11347331
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||||    
T  11347266 aagagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatggcagaataa 11347331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 34482977 - 34482912
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||| | |||||||||||||||||||||||| |||||||    
T  34482977 aagagcaatgctatatatcaaga--aagattttttcaagaaaatttcaagaatgatatggtagaataa 34482912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 6041884 - 6041947
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||| ||||||||    
T  6041884 gagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatgacagaataa 6041947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 37217118 - 37217055
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||||    
T  37217118 gagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatggcagaataa 37217055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 3137481 - 3137416
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||| | ||||||||||||||||||| |||||| |||||    
T  3137481 aagagcaatgctatatatcaaga--aagattttttcaagaaaatttcaagaatgacatggcaaaataa 3137416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 8320649 - 8320586
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||  ||||||||||||  |||||||||| |||||||||| ||||||||||||||| |||||    
T  8320649 gagcaatgttatatatcaaga--aagattttatcaagaaaattttaagaatgatatggcaaaataa 8320586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 30385011 - 30385074
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||| ||||||||  |||||||||| ||||||||||||| ||||| ||||||||||||    
T  30385011 gagcaatgctatttatcaaga--aagattttatcaagaaaatttcaaaaatgacatggcagaataa 30385074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 33145713 - 33145775
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  ||||||||||||| ||||||| |||||||| ||||||||||||    
T  33145713 gagcaatgctatatatcaaga--aagattttattaa-aaaattttaagaatgacatggcagaataa 33145775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 19650947 - 19650902
Alignment:
Q  323 agaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||||    
T  19650947 agaaagattttatcaagaaaattttaagaatgacatggcagaataa 19650902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 47738123 - 47738168
Alignment:
Q  323 agaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||    
T  47738123 agaaagattttatcaagaaatattcaagaatgatatggcagaataa 47738168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 37522051 - 37522116
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||| | |||||||||| |||||||| ||| ||||||||    
T  37522051 aagagcaatactatatatcaaga--aagattttttcaagaaaattttaagaatgacatgacagaataa 37522116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 36865093 - 36865029
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||| |||   ||||||||||||||||||||| |||||||| |||| |||||||    
T  36865093 agagcaatgctatatattaagg--aagattttattaagaaaattttaagaatgacatggtagaataa 36865029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 42297352 - 42297403
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatga 355  Q
    |||||||| |||||||||||||  |||||||||| |||||||||| ||||||||    
T  42297352 agagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatga 42297403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 9797076 - 9797031
Alignment:
Q  323 agaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||| | ||||||| ||||||||||| ||||||||||||    
T  9797076 agaaagattttctcaagaaaaattcaagaatgacatggcagaataa 9797031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 22426391 - 22426346
Alignment:
Q  323 agaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||||| |||||||||| || ||||| ||||||||||||    
T  22426391 agaaagattttatcaagaaaattttaaaaatgacatggcagaataa 22426346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 368
Target Start/End: Original strand, 24343544 - 24343610
Alignment:
Q  300 taagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||| |||||||| ||||  |||||||||| ||||||| ||||| | | ||||||||||||||    
T  24343544 taagagcaatgctatatattaaga--aagattttatcaagaaaaattcaaaattaatatggcagaataa 24343610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 299 - 368
Target Start/End: Original strand, 45637708 - 45637775
Alignment:
Q  299 ataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  45637708 ataagagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 45637775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 15577916 - 15577852
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  15577916 agagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 15577852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 4974800 - 4974737
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  4974800 gagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 4974737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 34482835 - 34482898
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  ||||||||||||||||||||| |||||||| ||||||||||||    
T  34482835 gagcaatgctatatatcaaga--aagattttattaagaaaattttaagaatgacatggcagaataa 34482898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 42611811 - 42611874
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  42611811 gagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 42611874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 15329271 - 15329336
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||| ||||||||    
T  15329271 aagagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatgacagaataa 15329336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 24394972 - 24395035
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||||    
T  24394972 gagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatggcagaataa 24395035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 25167915 - 25167852
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||| |||||||||||| |||||||| ||||||||||||    
T  25167915 gagcaatgctatatatcaaga--aagatttttttaagaaaattttaagaatgacatggcagaataa 25167852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 48880992 - 48880929
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||| ||||||||    
T  48880992 gagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatgacagaataa 48880929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 35444557 - 35444621
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||| ||||  |||||||| | ||||||||||||||||||| ||||||||||||    
T  35444557 agagcaatgctatatattaaga--aagattttttcaagaaaatttcaagaatgacatggcagaataa 35444621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 3961979 - 3962042
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||| ||||||||    
T  3961979 gagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatgacagaataa 3962042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 37477148 - 37477082
Alignment:
Q  300 taagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||| |||||||||||||  |||||||| | ||||||| || |||||||| ||||||||||||    
T  37477148 taagagcaatgctatatatcaaga--aagattttctcaagaaaaatttaagaatgacatggcagaataa 37477082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 29737147 - 29737202
Alignment:
Q  311 ctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||||||  |||||||| |||||||||||| |||||||| |||| |||||||    
T  29737147 ctatatatcaaga--aagatttttttaagaaaattttaagaatgacatggtagaataa 29737202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 20010162 - 20010112
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatga 355  Q
    ||||||| |||||||||||||  |||||||||| || ||||||||||||||||    
T  20010162 gagcaatgctatatatcaaga--aagattttatcaaaaaaatttcaagaatga 20010112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 4434072 - 4434009
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||    
T  4434072 gagcaatgctatatatcaaga--aagatttttttaagaaaatttcaagaatgatatggcagaataa 4434009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 6043579 - 6043513
Alignment:
Q  300 taagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||| |||||||||||||  |||||||||| ||||||||||||||||||| |||| |||||||    
T  6043579 taagagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggaagaataa 6043513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 2477634 - 2477699
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||||    
T  2477634 aagagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatggcagaataa 2477699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 3362777 - 3362841
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||||||||  |||||||||| ||||||||| ||||||||| ||||||||||||    
T  3362777 agagcaatgctatatatcaaga--aagattttatcaagaaaattccaagaatgacatggcagaataa 3362841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 38899792 - 38899728
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||||||||  |||||||||| ||||||||| ||||||||| ||||||||||||    
T  38899792 agagcaatgctatatatcaaga--aagattttatcaagaaaattccaagaatgacatggcagaataa 38899728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 11361196 - 11361133
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||||    
T  11361196 gagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatggcagaataa 11361133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 368
Target Start/End: Original strand, 14138664 - 14138731
Alignment:
Q  299 ataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||||  ||||||||||||  |||||||||| ||||||||||||||||| | ||||||||||||    
T  14138664 ataagagcaatgttatatatcaaga--aagattttatcaagaaaatttcaagaattacatggcagaataa 14138731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 8145393 - 8145438
Alignment:
Q  323 agaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  8145393 agaaagattttatcaagaaaatttcaagaatgacatggcagaataa 8145438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 37321859 - 37321795
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| ||||||||| | ||||||||||||| |||||||||| |||||||| ||||||||||||    
T  37321859 gagcaatgctatatatcta-agaaagattttatcaagaaaattttaagaatgacatggcagaataa 37321795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 4892200 - 4892265
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||| | |||||||||| |||||||| ||||||||||||    
T  4892200 aagagcaatgctatatatcaaga--aagattttttcaagaaaattttaagaatgacatggcagaataa 4892265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 12850801 - 12850864
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| ||||||||| ||| ||||| ||||||||||||    
T  12850801 gagcaatgctatatatcaaga--aagattttatcaagaaaattccaaaaatgacatggcagaataa 12850864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 22913119 - 22913056
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||| | ||||||| ||||||||||| ||||||||||||    
T  22913119 gagcaatgctatatatcaaga--aagattttttcaagaaaaattcaagaatgacatggcagaataa 22913056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 25398238 - 25398301
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||| | |||||||||| |||||||| ||||||||||||    
T  25398238 gagcaatgctatatatcaaga--aagattttttcaagaaaattttaagaatgacatggcagaataa 25398301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 33584394 - 33584331
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||| | |||||||||| |||||||| ||||||||||||    
T  33584394 gagcaatgctatatatcaaga--aagattttttcaagaaaattttaagaatgacatggcagaataa 33584331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 3522071 - 3522008
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||  ||||||||||||  |||||||| | ||||||||||||| ||||| ||||||||||||    
T  3522071 gagcaatgttatatatcaaga--aagattttttcaagaaaatttcaaaaatgacatggcagaataa 3522008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 2624825 - 2624900
Alignment:
Q  291 tattttttataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||| ||||| ||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  2624825 tatttattatatgagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgaaatggcagaataa 2624900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 22199250 - 22199324
Alignment:
Q  292 attttttataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||| |||| ||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  22199250 attttatatatgagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 22199324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 10442856 - 10442791
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  10442856 aagagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 10442791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 31078885 - 31078821
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  31078885 agagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 31078821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 36072947 - 36073010
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  36072947 gagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 36073010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 49387953 - 49387890
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  49387953 gagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 49387890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 21802389 - 21802324
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  || ||||||| ||||||||||||||||||| ||||||||||||    
T  21802389 aagagcaatgctatatatcaaga--aatattttatcaagaaaatttcaagaatgacatggcagaataa 21802324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 24128237 - 24128302
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||| | ||||||||||||||||||| ||||||||||||    
T  24128237 aagagcaatgctatatatcaaga--aagattttttcaagaaaatttcaagaatgacatggcagaataa 24128302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 47290064 - 47290129
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||| | ||||||||||||||||||| ||||||||||||    
T  47290064 aagagcaatgctatatatcaaga--aagattttttcaagaaaatttcaagaatgacatggcagaataa 47290129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 4751445 - 4751509
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||||||||  |||||||||| ||||||||| ||||||||| ||||||||||||    
T  4751445 agagcaatgctatatatcaaga--aagattttatcaagaaaattccaagaatgacatggcagaataa 4751509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 33530754 - 33530690
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||||||||  |||||||||| ||||||| ||||||||||| ||||||||||||    
T  33530754 agagcaatgctatatatcaaga--aagattttatcaagaaaaattcaagaatgacatggcagaataa 33530690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 46441844 - 46441907
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||| ||||||||||||||||||||| |||||| |||||    
T  46441844 gagcaatgctatatatcaaga--aagatttttttaagaaaatttcaagaatgacatggcaaaataa 46441907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 368
Target Start/End: Complemental strand, 7745176 - 7745114
Alignment:
Q  304 agcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||||    
T  7745176 agcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatggcagaataa 7745114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 368
Target Start/End: Original strand, 36073347 - 36073413
Alignment:
Q  300 taagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||| ||| |||||||||||||  |||||||| | ||||||||||||||||||| ||||||||||||    
T  36073347 taagaggaatgctatatatcaaga--aagattttttcaagaaaatttcaagaatgacatggcagaataa 36073413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 24392665 - 24392730
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||| | ||||||| ||||||||||| ||||||||||||    
T  24392665 aagagcaatgctatatatcaaga--aagattttctcaagaaaaattcaagaatgacatggcagaataa 24392730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 44893424 - 44893489
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||| | || |||||||||||||||| ||||||||||||    
T  44893424 aagagcaatgctatatatcaaga--aagattttttcaaaaaaatttcaagaatgacatggcagaataa 44893489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 23964532 - 23964467
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||  ||||||||||||  |||||||||| || ||||||| |||||||| ||||||||||||    
T  23964532 aagagcaatgttatatatcaaga--aagattttatcaaaaaaattttaagaatgacatggcagaataa 23964467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 50156645 - 50156580
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||| ||||  |||||||| | |||||||||| |||||||| ||||||||||||    
T  50156645 aagagcaatgctatatattaaga--aagattttttcaagaaaattttaagaatgacatggcagaataa 50156580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 53123029 - 53123094
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaa-gaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||||||||  |||||||| | || ||||||||||||||||| ||||||||||||    
T  53123029 agagcaatgctatatatcaaga--aagattttttcaaagaaaatttcaagaatgacatggcagaataa 53123094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 368
Target Start/End: Original strand, 17655458 - 17655493
Alignment:
Q  333 tattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||||||||||||||| ||||||||||||    
T  17655458 tattaagaaaatttcaagaatgacatggcagaataa 17655493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 21936081 - 21936144
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||    
T  21936081 gagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgatatggcagaataa 21936144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 13354844 - 13354909
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||  ||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||    
T  13354844 aagagcaatgttatatatcaaga--aagattttatcaagaaaatttcaagaatgatatggcagaataa 13354909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 23268131 - 23268064
Alignment:
Q  299 ataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||| |||||||||||||  |||||||| | ||||||||||||||||||| ||||||||||||    
T  23268131 ataagagcaatgctatatatcaaga--aagattttttcaagaaaatttcaagaatgacatggcagaataa 23268064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 31174881 - 31174836
Alignment:
Q  323 agaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  31174881 agaaagattttattaagaaaatttcaagaatgacatggcagaataa 31174836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 9293643 - 9293578
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||||| |||||| |||||||||||| ||||||||||||    
T  9293643 aagagcaatgctatatatcaaga--aagattttatcaagaaattttcaagaatgacatggcagaataa 9293578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 14941432 - 14941368
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||||||||  |||||||||||||||||  ||||||||||| ||||||||||||    
T  14941432 agagcaatgctatatatcaaga--aagattttattaagaaagattcaagaatgacatggcagaataa 14941368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 35160756 - 35160820
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||||    
T  35160756 agagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatggcagaataa 35160820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 10661888 - 10661950
Alignment:
Q  304 agcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||||    
T  10661888 agcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatggcagaataa 10661950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 22591500 - 22591545
Alignment:
Q  323 agaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  22591500 agaaagattttattaaaaaaaattcaagaatgatatggcagaataa 22591545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 43330907 - 43330975
Alignment:
Q  298 tataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||||| |||||||||||||  |||||||| | || |||| ||||||||||| ||||||||||||    
T  43330907 tataagagcaatgctatatatcaaga--aagattttctcaaaaaaaattcaagaatgacatggcagaataa 43330975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 7475574 - 7475510
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||||||||  |||||||| | ||||||||||||||||||| |||  |||||||    
T  7475574 agagcaatgctatatatcaaga--aagattttttcaagaaaatttcaagaatgacatgatagaataa 7475510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 33380207 - 33380270
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||| | |||||||||| |||||||| ||||| ||||||    
T  33380207 gagcaatgctatatatcaaga--aagattttttcaagaaaattttaagaatgacatggctgaataa 33380270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 27847650 - 27847695
Alignment:
Q  323 agaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||||||||||||  ||||||||||| ||| ||||||||    
T  27847650 agaaagattttattaagaaagattcaagaatgacatgacagaataa 27847695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 368
Target Start/End: Original strand, 19015401 - 19015467
Alignment:
Q  300 taagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||||| |||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||    
T  19015401 taagagcaatgctatatatcaaga--aagattttttcaagaaaatttcaagaatgatatggcagaataa 19015467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 368
Target Start/End: Complemental strand, 36966784 - 36966710
Alignment:
Q  292 attttttataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||| ||||| ||||||| |||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||    
T  36966784 atttgttatatgagcaatgctatatatcaaga--aagattttttcaagaaaatttcaagaatgatatggcagaataa 36966710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 37821899 - 37821836
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||    
T  37821899 gagcaatgctatatatcaaga--aagattttttcaagaaaatttcaagaatgatatggcagaataa 37821836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 40214988 - 40215051
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  40214988 gagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 40215051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 16045865 - 16045800
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||| ||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  16045865 aagagtaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 16045800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 25463674 - 25463739
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||||| |||||||||| |||||||| ||||||||||||    
T  25463674 aagagcaatgctatatatcaaga--aagattttatgaagaaaattttaagaatgacatggcagaataa 25463739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 368
Target Start/End: Original strand, 6883478 - 6883550
Alignment:
Q  294 tttttataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||| || ||||||| |||||||| ||||  |||||||| ||||||||||||||||||||| ||||||||||||    
T  6883478 tttttttatgagcaatgctatatattaaga--aagatttttttaagaaaatttcaagaatgacatggcagaataa 6883550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 9910358 - 9910295
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||| | ||||||||||||||||||| ||||||||||||    
T  9910358 gagcaatgctatatatcaaga--aagattttttcaagaaaatttcaagaatgacatggcagaataa 9910295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 44094698 - 44094761
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  || ||||||| ||||||||||||||||||| ||||||||||||    
T  44094698 gagcaatgctatatatcaaga--aatattttatcaagaaaatttcaagaatgacatggcagaataa 44094761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 18404440 - 18404505
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||||| |||||||||| |||||||| |||| |||||||    
T  18404440 aagagcaatgctatatatcaaga--aagattttatcaagaaaattttaagaatgacatggtagaataa 18404505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 3559615 - 3559680
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||| |||| |||||||||||||  |||||||||| || ||||||| |||||||| ||||||||||||    
T  3559615 aagaacaatgctatatatcaaga--aagattttatcaaaaaaattttaagaatgacatggcagaataa 3559680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 25973409 - 25973476
Alignment:
Q  298 tataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||||  ||||||||||||  |||||||||| | ||||||||||||||||| | ||||||||||    
T  25973409 tataagagcaatgttatatatcaaga--aagattttatcatgaaaatttcaagaatgaca-ggcagaataa 25973476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 41876508 - 41876444
Alignment:
Q  302 agagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||||||| |||||||||||||  |||||||| | || ||||||| |||||||| ||||||||||||    
T  41876508 agagcaatgctatatatcaaga--aagattttttcaaaaaaattttaagaatgacatggcagaataa 41876444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 32000332 - 32000269
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||| | ||||||| ||||||||||| ||| ||||||||    
T  32000332 gagcaatgctatatatcaaga--aagattttctcaagaaaaattcaagaatgacatgacagaataa 32000269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 12840 - 12905
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||| | ||||||||||||||||||| ||||||||||||    
T  12840 aagagcaatgctatatatcaaga--aagattttttcaagaaaatttcaagaatgacatggcagaataa 12905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 41009 - 41074
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||||| || |||||||||||||||| ||||||||||||    
T  41009 aagagcaatgctatatatcaaga--aagattttatcaaaaaaatttcaagaatgacatggcagaataa 41074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 11621 - 11684
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||||||||||||  |||||||||| ||||||||||||||||||| ||| ||||||||    
T  11621 gagcaatgctatatatcaaga--aagattttatcaagaaaatttcaagaatgacatgacagaataa 11684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 47850 - 47913
Alignment:
Q  303 gagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||| |||| ||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  47850 gagcaatgctatttatcaaga--aagattttatcaagaaaatttcaagaatgacatggcagaataa 47913  T

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Target: scaffold0228 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 8420 - 8465
Alignment:
Q  323 agaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  8420 agaaagattttatcaagaaaatttcaagaatgacatggcagaataa 8465  T

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Target: scaffold0228; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 16002 - 16047
Alignment:
Q  323 agaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  16002 agaaagattttatcaagaaaatttcaagaatgacatggcagaataa 16047  T

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Target: scaffold0228; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 25954 - 25999
Alignment:
Q  323 agaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  25954 agaaagattttatcaagaaaatttcaagaatgacatggcagaataa 25999  T

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Target: scaffold0204 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 4394 - 4459
Alignment:
Q  301 aagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    ||||||||| |||||||||||||  |||||||| | |||||||||| |||||||| ||||||||||||    
T  4394 aagagcaatgctatatatcaaga--aagattttttcaagaaaattttaagaatgacatggcagaataa 4459  T

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Target: scaffold0665 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 368
Target Start/End: Original strand, 3064 - 3131
Alignment:
Q  299 ataagagcaatcctatatatcaagagaaagattttattaagaaaatttcaagaatgatatggcagaataa 368  Q
    |||| |||||| |||||||||||||  |||||||||| || ||||||| |||||||| ||||||||||||    
T  3064 ataacagcaatgctatatatcaaga--aagattttatcaataaaattttaagaatgacatggcagaataa 3131  T

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