View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1829_low_11 (Length: 236)
Name: NF1829_low_11
Description: NF1829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1829_low_11 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 27004537 - 27004319
Alignment:
| Q |
18 |
gtatggcaatgcctctttaaataaagtatacaacctttcaaataggattctgcttttgtttcttcattatttacataccgagattgatcaaaggaaggta |
117 |
Q |
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| T |
27004537 |
gtatggcaatgcctctttaaataaagtatacaacctttcaaataggattctgcttttgtttcttcattatttacataccgagattgatcaaaggaaggta |
27004438 |
T |
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| Q |
118 |
tcatcctctgcttaatttagtaacactggatttcttttggtattagattcgagggttggaaaggctttgtttaattgttgggtcgatcgcccaaagtgca |
217 |
Q |
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| T |
27004437 |
tcatcctctgcttaatttagtaacactggatttcttttggtattagattcgagggttggcatggccttgtttacttgttgggtcgatcgcccaaagtgca |
27004338 |
T |
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| Q |
218 |
aggagcaaaaatactattt |
236 |
Q |
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| T |
27004337 |
aggtgcaaacatactattt |
27004319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 26989981 - 26989765
Alignment:
| Q |
18 |
gtatggcaatgcctctttaaataaagtatacaacctttcaaataggattctgcttttgtttcttcattatttacataccgagattgatcaaaggaaggta |
117 |
Q |
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| T |
26989981 |
gtatgccaatgcttctttaaataaagtagacaacctttcagataggattctgcttttgtttcttaattatttacatattgaaattgatcaaaggaaggta |
26989882 |
T |
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| Q |
118 |
tcatcctctgcttaatttagtaacactggatttcttttggtattagattcgagggttggaaaggctttgtttaattgttgggtcgatcgcccaaagtgca |
217 |
Q |
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| T |
26989881 |
tcatcctccgcttgatttagtaatactgaatttcttatggtgttagattcgagggttggcatggccttgtttacttattggatcgattgctcaaagtgca |
26989782 |
T |
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| Q |
218 |
aggagcaaaaatactat |
234 |
Q |
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| T |
26989781 |
aggtgcaaacatactat |
26989765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 26977679 - 26977877
Alignment:
| Q |
31 |
tctttaaataaagtatacaacctttcaaataggattctgcttttgtttcttcattatttacataccgagattgatcaaaggaaggtatcatcctctgctt |
130 |
Q |
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| T |
26977679 |
tcttttaataaagaatacaacctttcaaataagattctgcttccgtttcttcatt-----------gaaattgatcaagggaagctatcgacctctactt |
26977767 |
T |
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| Q |
131 |
aatttagtaacactg----gatttcttttggtattagattcgagggttggaaaggctttgtttaattgttgggtcgatcgcccaaagtgcaaggagcaaa |
226 |
Q |
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| T |
26977768 |
gatttagtcacactgaattaatttcttttggtgttagattcgaggattggcatggccttctttacttgttggattggttgctcagagtgcaaggtgcaaa |
26977867 |
T |
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