View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1829_low_7 (Length: 253)

Name: NF1829_low_7
Description: NF1829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1829_low_7
NF1829_low_7
[»] chr1 (20 HSPs)
chr1 (2-244)||(9637058-9637300)
chr1 (29-244)||(48606608-48606823)
chr1 (50-244)||(25017371-25017565)
chr1 (50-244)||(40864715-40864909)
chr1 (29-244)||(52753816-52754028)
chr1 (17-244)||(14498849-14499076)
chr1 (17-244)||(30559001-30559229)
chr1 (49-244)||(32379852-32380043)
chr1 (90-243)||(35948975-35949128)
chr1 (65-244)||(26272925-26273104)
chr1 (65-214)||(21973814-21973963)
chr1 (99-244)||(30054855-30055000)
chr1 (65-166)||(17127439-17127540)
chr1 (132-244)||(17874845-17874957)
chr1 (167-240)||(11843899-11843972)
chr1 (167-222)||(28463197-28463252)
chr1 (189-223)||(33489827-33489861)
chr1 (189-223)||(41972268-41972302)
chr1 (197-242)||(51053101-51053146)
chr1 (190-222)||(170468-170500)
[»] chr4 (15 HSPs)
chr4 (1-244)||(31944551-31944795)
chr4 (59-244)||(4325406-4325590)
chr4 (65-244)||(12211222-12211401)
chr4 (65-244)||(53693030-53693209)
chr4 (65-195)||(27364883-27365013)
chr4 (113-242)||(3074417-3074546)
chr4 (65-240)||(55464660-55464835)
chr4 (65-241)||(42843707-42843886)
chr4 (129-244)||(8897922-8898037)
chr4 (129-244)||(10632640-10632757)
chr4 (170-244)||(25182875-25182949)
chr4 (150-244)||(1147584-1147678)
chr4 (129-242)||(3240274-3240385)
chr4 (189-223)||(48130099-48130133)
chr4 (189-223)||(30110096-30110130)
[»] chr6 (9 HSPs)
chr6 (29-244)||(11970924-11971138)
chr6 (1-240)||(12180525-12180765)
chr6 (65-244)||(24074412-24074591)
chr6 (104-244)||(3050902-3051044)
chr6 (48-242)||(25340428-25340621)
chr6 (72-244)||(25599159-25599334)
chr6 (65-244)||(32441970-32442146)
chr6 (118-217)||(30621226-30621324)
chr6 (112-240)||(1296556-1296684)
[»] chr7 (19 HSPs)
chr7 (17-245)||(23179881-23180109)
chr7 (65-244)||(26493710-26493889)
chr7 (17-242)||(9230352-9230578)
chr7 (65-240)||(27387306-27387481)
chr7 (65-240)||(19399978-19400153)
chr7 (65-244)||(45197644-45197822)
chr7 (49-244)||(8638598-8638795)
chr7 (65-240)||(38575289-38575464)
chr7 (17-172)||(43727947-43728103)
chr7 (75-244)||(18375416-18375583)
chr7 (132-244)||(14088815-14088927)
chr7 (132-244)||(14398833-14398945)
chr7 (17-115)||(23804623-23804722)
chr7 (132-244)||(25491630-25491742)
chr7 (161-244)||(9557784-9557867)
chr7 (138-244)||(25024596-25024702)
chr7 (189-244)||(26782310-26782365)
chr7 (189-244)||(10224015-10224070)
chr7 (189-223)||(10868468-10868502)
[»] chr8 (22 HSPs)
chr8 (29-244)||(13152390-13152605)
chr8 (17-244)||(14446784-14447011)
chr8 (49-244)||(27190755-27190950)
chr8 (65-244)||(30791454-30791633)
chr8 (17-244)||(24333665-24333896)
chr8 (61-244)||(9256385-9256568)
chr8 (65-242)||(16532630-16532806)
chr8 (17-244)||(28846572-28846784)
chr8 (65-240)||(21958512-21958687)
chr8 (104-244)||(10014431-10014571)
chr8 (129-236)||(32372022-32372129)
chr8 (129-244)||(32359486-32359601)
chr8 (134-244)||(40146006-40146116)
chr8 (129-244)||(32342880-32342995)
chr8 (129-244)||(32355367-32355482)
chr8 (82-245)||(42446935-42447105)
chr8 (87-244)||(10467786-10467930)
chr8 (131-237)||(34228232-34228338)
chr8 (136-244)||(2826302-2826407)
chr8 (190-244)||(24592333-24592387)
chr8 (189-223)||(3435409-3435443)
chr8 (189-223)||(40470487-40470521)
[»] scaffold0019 (1 HSPs)
scaffold0019 (65-244)||(134850-135029)
[»] scaffold0178 (1 HSPs)
scaffold0178 (17-242)||(17691-17917)
[»] chr2 (19 HSPs)
chr2 (47-244)||(12539556-12539752)
chr2 (65-244)||(19951827-19952006)
chr2 (69-242)||(35649658-35649831)
chr2 (65-244)||(33453184-33453363)
chr2 (48-233)||(34317480-34317659)
chr2 (65-221)||(22483549-22483705)
chr2 (65-221)||(34526352-34526508)
chr2 (65-221)||(22464670-22464826)
chr2 (97-189)||(13308748-13308840)
chr2 (129-244)||(26656337-26656452)
chr2 (138-244)||(7886654-7886758)
chr2 (129-244)||(18425953-18426072)
chr2 (104-244)||(34907624-34907761)
chr2 (150-219)||(31392485-31392554)
chr2 (196-244)||(31392927-31392975)
chr2 (185-244)||(13309709-13309768)
chr2 (167-222)||(45121334-45121389)
chr2 (190-244)||(45261841-45261895)
chr2 (188-244)||(1954952-1955008)
[»] chr5 (15 HSPs)
chr5 (17-244)||(3055433-3055661)
chr5 (8-244)||(23244566-23244803)
chr5 (48-244)||(8785765-8785961)
chr5 (65-244)||(203851-204029)
chr5 (48-244)||(27168799-27168987)
chr5 (69-209)||(1280382-1280522)
chr5 (17-244)||(11852666-11852894)
chr5 (65-221)||(26540674-26540830)
chr5 (107-244)||(2228957-2229094)
chr5 (114-244)||(22712895-22713025)
chr5 (84-244)||(22541905-22542065)
chr5 (129-212)||(19518970-19519053)
chr5 (167-229)||(192060-192122)
chr5 (189-222)||(38269409-38269442)
chr5 (189-229)||(28801427-28801467)
[»] chr3 (16 HSPs)
chr3 (1-242)||(3856874-3857116)
chr3 (65-240)||(31989029-31989204)
chr3 (65-244)||(43137127-43137305)
chr3 (47-235)||(51261961-51262149)
chr3 (65-240)||(53710398-53710573)
chr3 (48-203)||(15667956-15668111)
chr3 (65-240)||(24908393-24908568)
chr3 (65-244)||(37381865-37382044)
chr3 (136-244)||(24988809-24988917)
chr3 (129-242)||(22934797-22934910)
chr3 (176-244)||(9743379-9743447)
chr3 (84-155)||(43585836-43585907)
chr3 (168-221)||(38282510-38282563)
chr3 (185-240)||(51408609-51408664)
chr3 (190-223)||(5135410-5135443)
chr3 (189-221)||(43585933-43585965)
[»] scaffold0007 (1 HSPs)
scaffold0007 (65-244)||(259918-260097)
[»] scaffold0002 (1 HSPs)
scaffold0002 (29-244)||(435344-435566)
[»] scaffold0015 (1 HSPs)
scaffold0015 (65-240)||(214161-214336)
[»] scaffold0168 (1 HSPs)
scaffold0168 (65-221)||(15814-15970)
[»] scaffold0198 (1 HSPs)
scaffold0198 (99-244)||(1430-1575)
[»] scaffold0012 (1 HSPs)
scaffold0012 (65-221)||(197105-197261)
[»] scaffold0726 (1 HSPs)
scaffold0726 (136-244)||(954-1062)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 2 - 244
Target Start/End: Original strand, 9637058 - 9637300
Alignment:
Q  2 gttataaagccctaacaattagctagtaaataatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatg 101  Q
    |||||||||||||  |||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |||||    
T  9637058 gttataaagccctgccaataagctagtaaataatcttataagttcgtgagaaataattgttaccaacaagatcaatgatgcgtggttcaatgacttgatg 9637157  T
Q  102 atatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctccta 201  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  9637158 atatgttacaccgagcgggtgatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggaaagggcatttacatccta 9637257  T
Q  202 attttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9637258 attttatttagcacactattgataggttatgtttcatctctct 9637300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 48606823 - 48606608
Alignment:
Q  29 aaataatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattc 128  Q
    ||||||||||||| ||| ||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48606823 aaataatcttatatgttcgtgggaaagaattgctaccaacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagcgggagatattc 48606724  T
Q  129 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 228  Q
    |||| ||||||| ||||||||||||||  |||| |||||||||||||||||  || |||||||||||||| |||||||||||||||||||||||  || |    
T  48606723 aagtaacttgataatgttgatattattcaaacactcaccgcaaagaggtcttcgaaagggcatttacctcataattttatttagcacactattggcagat 48606624  T
Q  229 tatgtttcatctctct 244  Q
    ||||||||||||||||    
T  48606623 tatgtttcatctctct 48606608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 50 - 244
Target Start/End: Original strand, 25017371 - 25017565
Alignment:
Q  50 agaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgat 149  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| ||||||||||||||||||    
T  25017371 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatcttacaccgagcgagagatattcaaatcacttgatgatgttgat 25017470  T
Q  150 attatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||| |||| ||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| ||||||| |  |||||||||    
T  25017471 attattcgaacgttcaccgcaaagaggtctcagaaagggcatatacctcctaattttatttagcacactattgacaggttatatcacatctctct 25017565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 40864909 - 40864715
Alignment:
Q  50 agaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgat 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| || | ||||||||||||||||||| ||||||||    
T  40864909 agaaataattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatcttacaccgaacgagggatattcaagtcacttgataatgttgat 40864810  T
Q  150 attatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||| ||||||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  40864809 attattcgaacattcaccgcaaagaggttttagaaagggcatttacctcctaattttatttagcacactattaacaggttatgttacatctctct 40864715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 52754028 - 52753816
Alignment:
Q  29 aaataatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattc 128  Q
    ||||||||||||| |  ||||||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  52754028 aaataatcttataagcctgtgagaaagaattattaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgaacgggagatattc 52753929  T
Q  129 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 228  Q
    |||||| |||||||||||||||||||| |||||||   ||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| | ||    
T  52753928 aagtcatttgatgatgttgatattattcgaacatt---cgcaaagaggtctcggaaagggtatttacctcctaattttatctagcacactattgacaagt 52753832  T
Q  229 tatgtttcatctctct 244  Q
    ||||||||||||||||    
T  52753831 tatgtttcatctctct 52753816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 14498849 - 14499076
Alignment:
Q  17 caattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccga 115  Q
    |||| |||||||||| |||||||||| | | |||||||| | |||||||||||| |||||||||| |||||| ||||||| ||||||||| ||||| |||    
T  14498849 caataagctagtaaaataatcttataagctcgtgagaaagatttgttaccaacatgatcaacgatttgtggt-caatgacttgatgatatcttacatcga 14498947  T
Q  116 gcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcac 215  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| || ||| |||||||||||||||| ||||||  ||    
T  14498948 gcgggagatattcaagtcatttgatgatgttgatattattcgaacattcatcgcaaagaggtctcagaaaggacatttacctcctaattatatttaaaac 14499047  T
Q  216 actattgataggttatgtttcatctctct 244  Q
    |||||||| | ||||||||||||||||||    
T  14499048 actattgacaagttatgtttcatctctct 14499076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 30559229 - 30559001
Alignment:
Q  17 caattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccga 115  Q
    |||| |||||||||| || ||||||| | | | |||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  30559229 caataagctagtaaaatattcttataagctcgcgagaaagaattgttatcaacaagatcaacgatgtgtggttctatgacttgatgatatgttacaccga 30559130  T
Q  116 gcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcac 215  Q
    ||| ||||||||||||||||||||||||| |||||||||| |||||||||||| ||| || ||||  | | |  ||||||||||||||||||||||||||    
T  30559129 gcgagagatattcaagtcacttgatgatgctgatattattcgaacattcaccgtaaatagatctcataaatgatatttacctcctaattttatttagcac 30559030  T
Q  216 actattgataggttatgtttcatctctct 244  Q
    ||||||| ||| |||||||||||||||||    
T  30559029 actattggtagattatgtttcatctctct 30559001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 49 - 244
Target Start/End: Complemental strand, 32380043 - 32379852
Alignment:
Q  49 gagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttga 148  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||   |||||||||| | |||||||||||||| |||||||||||||||||    
T  32380043 gagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgat---atgttacaccaaacgggagatattcaattcacttgatgatgttga 32379947  T
Q  149 tattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||||||| ||||||| | ||||||||||| ||| | | | ||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||    
T  32379946 tattattcgaacattta-cgcaaagaggtatcgaaaatgacatttacctcctaattttatttagcacactattgacaggttatgattcacctctct 32379852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 90 - 243
Target Start/End: Complemental strand, 35949128 - 35948975
Alignment:
Q  90 aatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggc 189  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| ||| |    
T  35949128 aatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatgttattcgaacattcaccgaaaagaggtctcggaaaggac 35949029  T
Q  190 atttacctcctaattttatttagcacactattgataggttatgtttcatctctc 243  Q
    ||||||||||||||||||||| |||| |||| ||||| |||| |||||||||||    
T  35949028 atttacctcctaattttattttgcacgctatagatagattatatttcatctctc 35948975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 26273104 - 26272925
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    |||||| ||||||||||||| |||||||||  ||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||| ||||||||    
T  26273104 caacaaaatcaacgatgtgttgttcaatgatttgatgatatgttacatcgagcaggagatattcaagtcacgtgatgatgttaatattattcgaacattc 26273005  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    | |||||| |||||||||| |||||| |||||| ||||||||||||||||||||||||  | ||||| |||||| |||||    
T  26273004 atcgcaaacaggtctcggaaagggcaattacctactaattttatttagcacactattggcatgttatatttcatatctct 26272925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 21973963 - 21973814
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||| ||| ||| |||||| |||||  |||||||||||||||| ||||||||||||||||| |||||||||||  ||||||||||| ||||||||    
T  21973963 caacaagattaacaatgagtggttaaatgatttgatgatatgttacactgagcgggagatattcaaatcacttgatgacattgatattattcgaacattc 21973864  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagca 214  Q
    ||||||||||  ||||||| |||||||||||||||||||||||| |||||    
T  21973863 accgcaaagaaatctcggaaagggcatttacctcctaattttatctagca 21973814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 99 - 244
Target Start/End: Original strand, 30054855 - 30055000
Alignment:
Q  99 atgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctc 198  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| |||||| |||| ||| |||||||||||| ||  | | | ||||||||||    
T  30054855 atgatatgttacaccgagcgggagatattcaagtcacttgatcatattgacattattcgaaccttctccgcaaagaggtatcataaatgacatttacctc 30054954  T
Q  199 ctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||||||||||||| |||||| | ||||||||||||||||||    
T  30054955 ctaattttatttagcacattattgacacgttatgtttcatctctct 30055000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 17127439 - 17127540
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  17127439 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcgcttgatgatgttgatattattcgaacattc 17127538  T
Q  165 ac 166  Q
    ||    
T  17127539 ac 17127540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 17874845 - 17874957
Alignment:
Q  132 tcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttat 231  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||||||| | ||  ||||||||| ||||||||||||| ||||||||||| || ||||    
T  17874845 tcactggatgatgttgatattattcaaacattcaccgcaaagaggtctcgaaaagatcatttaccttctaattttatttaccacactattgacagattat 17874944  T
Q  232 gtttcatctctct 244  Q
     ||||||||||||    
T  17874945 atttcatctctct 17874957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 11843972 - 11843899
Alignment:
Q  167 cgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 240  Q
    |||||| ||||||| || ||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  11843972 cgcaaataggtctctgaaaggacatttacctcctaattttatttagcacactattggtaggttatatttcatct 11843899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 28463197 - 28463252
Alignment:
Q  167 cgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattg 222  Q
    ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||    
T  28463197 cgcaaagaggtcttggaaagggcattcacctcctaattttatttagcacactattg 28463252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 33489827 - 33489861
Alignment:
Q  189 catttacctcctaattttatttagcacactattga 223  Q
    |||||||||||||||||||||||||||||||||||    
T  33489827 catttacctcctaattttatttagcacactattga 33489861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 41972302 - 41972268
Alignment:
Q  189 catttacctcctaattttatttagcacactattga 223  Q
    |||||||||||||||||||||||||||||||||||    
T  41972302 catttacctcctaattttatttagcacactattga 41972268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 51053101 - 51053146
Alignment:
Q  197 tcctaattttatttagcacactattgataggttatgtttcatctct 242  Q
    ||||||||||||||||||||||||||| || |||| ||| ||||||    
T  51053101 tcctaattttatttagcacactattgagagattatattttatctct 51053146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 170500 - 170468
Alignment:
Q  190 atttacctcctaattttatttagcacactattg 222  Q
    ||||||||||||||||||||||||||| |||||    
T  170500 atttacctcctaattttatttagcacattattg 170468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 31944551 - 31944795
Alignment:
Q  1 agttataaagccctaacaattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtga 99  Q
    |||||| |||||||  |||| |||||||||| |||||||||| | | |||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  31944551 agttatcaagccctgccaataagctagtaaaataatcttataagctcgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttga 31944650  T
Q  100 tgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcc 199  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  31944651 tgatatgttacaccgagtgtgagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtctcggaaagggcatttacctcc 31944750  T
Q  200 taattttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||||||||||||| |||||||||| | ||||||||||||||||||    
T  31944751 taattttatttagtacactattgacaagttatgtttcatctctct 31944795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 59 - 244
Target Start/End: Original strand, 4325406 - 4325590
Alignment:
Q  59 tgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttga 158  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||||    
T  4325406 tgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagtgggagataatcaacccacttgatgatgttgatattatttga 4325505  T
Q  159 acattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||| ||| | | ||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  4325506 acattcacagcaga-atgtctcagaaagggcaattacctcctaattttatttagcacactattgacaggttatgttgcatctctct 4325590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 12211401 - 12211222
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||||    
T  12211401 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgaacaggagatattcaagtcatttgatgatgttgatattattcgaacattc 12211302  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |   ||| ||||||||| | | | |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  12211301 atttcaatgaggtctcgaaaatgacatttacctcctaattttatttagcacactattggtaggttatatttcatctctct 12211222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 53693209 - 53693030
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  53693209 caacatgatcaacggtgtgtggttcaatgacttgatgatatgttacatcgagcgggagataatcaaggcacttgatgatgttgatattattcgaacattc 53693110  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    | ||||||||||||||||| |||||||| ||||| |||||| ||||||||||||||||  | ||||||||||||||||||    
T  53693109 atcgcaaagaggtctcggaaagggcattcacctcttaatttcatttagcacactattggcaagttatgtttcatctctct 53693030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 65 - 195
Target Start/End: Original strand, 27364883 - 27365013
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    |||||||||||||  ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27364883 caacaagatcaacagtgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 27364982  T
Q  165 accgcaaagaggtctcggatagggcatttac 195  Q
    |||| |||||||||||| | |||||||||||    
T  27364983 accgaaaagaggtctcgaaaagggcatttac 27365013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 3074417 - 3074546
Alignment:
Q  113 cgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttag 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  |||||||||| |||||||||||||||||    
T  3074417 cgagcgggagataatcaagtcacttgatgatgttgatattatttgaacattcatcgcaaagaggtctcaggaagggcatttatctcctaattttatttag 3074516  T
Q  213 cacactattgataggttatgtttcatctct 242  Q
    ||||||||||  | ||||||||||||||||    
T  3074517 cacactattggcaagttatgtttcatctct 3074546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 65 - 240
Target Start/End: Complemental strand, 55464835 - 55464660
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  55464835 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagaaaatcaagtcacttgatgatgttgatattattcgaacattc 55464736  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 240  Q
    ||   |||||||   || | | ||||| |||||||||||||||||||||||   ||||  ||||||| ||||||||    
T  55464735 actcgaaagaggctacgaaaaaggcatctacctcctaattttatttagcacgtaattggcaggttatatttcatct 55464660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 241
Target Start/End: Original strand, 42843707 - 42843886
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||| |||||||||| |||||  ||||||||||||| |  ||| | |||||||||||||||||||||||||||||||||| | ||||||||    
T  42843707 caacaagatcaacaatgtgtggtttaatgagttgatgatatgttatattgagtgagagatattcaagtcacttgatgatgttgatattaatcgaacattc 42843806  T
Q  165 accgcaaa---gaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 241  Q
    ||| ||||   ||||||||||  |||||||| || |||||||||||||||||||  ||||| |  ||||| |||||||||    
T  42843807 accacaaagaggaggtctcggggagggcattgacatcctaattttatttagcacgttattggtgagttatatttcatctc 42843886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 8898037 - 8897922
Alignment:
Q  129 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 228  Q
    |||||||| |||||||||||||||||| || ||||||||||||||||||||| || ||   ||||||||||||||||||||||||| ||||||| ||| |    
T  8898037 aagtcactggatgatgttgatattattcgagcattcaccgcaaagaggtctcagaaagactatttacctcctaattttatttagcaaactattggtagtt 8897938  T
Q  229 tatgtttcatctctct 244  Q
    ||| ||||||||||||    
T  8897937 tatatttcatctctct 8897922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 10632757 - 10632640
Alignment:
Q  129 aagtcacttgatgatgttgatattatttgaacatt--caccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgatag 226  Q
    |||||||||||||||||| || ||||| |||||||  ||||||||||| |||||||| |   |||||||||||||||||||||| ||||||||||| |||    
T  10632757 aagtcacttgatgatgttaatgttattcgaacattttcaccgcaaagaagtctcggaaatatcatttacctcctaattttattttgcacactattggtag 10632658  T
Q  227 gttatgtttcatctctct 244  Q
     |||| ||||||||||||    
T  10632657 cttatatttcatctctct 10632640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 25182949 - 25182875
Alignment:
Q  170 aaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  25182949 aaagaggtctcgaaaagggtatttaccttctaattttatttagcacactattgataggttatatttcatctctct 25182875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 1147584 - 1147678
Alignment:
Q  150 attatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||| |||||||||  |||||||||||||||| || | ||||||||||||||||| ||||  |||||||||| | ||||||||||||||||||    
T  1147584 attattcgaacattcattgcaaagaggtctcggaaagagtatttacctcctaattttctttaaaacactattgacaagttatgtttcatctctct 1147678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 3240385 - 3240274
Alignment:
Q  129 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 228  Q
    |||| ||||||||||||||||| |||| ||| ||||||||||||||| ||||| | | |  |||| |||||||||||||||||| ||||  ||| ||| |    
T  3240385 aagttacttgatgatgttgataatattcgaatattcaccgcaaagagatctcgaaaatgttatttgcctcctaattttatttagtacac--ttggtagat 3240288  T
Q  229 tatgtttcatctct 242  Q
    ||| ||||||||||    
T  3240287 tatatttcatctct 3240274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 48130099 - 48130133
Alignment:
Q  189 catttacctcctaattttatttagcacactattga 223  Q
    |||||||||||||||||||||||||||||||||||    
T  48130099 catttacctcctaattttatttagcacactattga 48130133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 30110096 - 30110130
Alignment:
Q  189 catttacctcctaattttatttagcacactattga 223  Q
    |||||||| ||||||||||||||||||||||||||    
T  30110096 catttaccacctaattttatttagcacactattga 30110130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 29 - 244
Target Start/End: Original strand, 11970924 - 11971138
Alignment:
Q  29 aaataatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattc 128  Q
    ||||||| ||||| || ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||    
T  11970924 aaataattttataagtatgtgagaaagaattgttaccaataagatcaacgatgtgtggttcaatgacttgatcatatgttacaccgagcggaagatattc 11971023  T
Q  129 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 228  Q
    |||||||||||||||||||||||| |  |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||    
T  11971024 aagtcacttgatgatgttgatattttgcgaacattcaccg-aaagaggtctcagaaagggcatttacctcctaattttatttagcacactattgacaggt 11971122  T
Q  229 tatgtttcatctctct 244  Q
    ||||||||||||||||    
T  11971123 tatgtttcatctctct 11971138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 12180765 - 12180525
Alignment:
Q  1 agttataaagccctaacaattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtga 99  Q
    |||||| |||||||  |||| |||| ||||| |||||||||| |   |||||||| ||||||||||||||||||||||  |||||||||||||||| |||    
T  12180765 agttatcaagccctgtcaataagctggtaaaataatcttataagcccgtgagaaaaaattgttaccaacaagatcaacattgtgtggttcaatgacttga 12180666  T
Q  100 tgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcc 199  Q
    ||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||| |    
T  12180665 tgatatgttacaccgagtgggagaaattcaagtcacttgatgttgttgatattattcgaacattcaccgcaaagaggtctcgggaagggcatttaccttc 12180566  T
Q  200 taattttatttagcacactattgataggttatgtttcatct 240  Q
    ||||||||||||||||| |||||| ||||||||||||||||    
T  12180565 taattttatttagcacattattgacaggttatgtttcatct 12180525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 65 - 244
Target Start/End: Original strand, 24074412 - 24074591
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||| |||||||||  |||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||    
T  24074412 caacaagatcaacaatgtgtggtaaaatgacttgatgatatgttacaccgagggggagatattcaagttacttgatgatgttgatattattcgaacattc 24074511  T
Q  165 -accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
     |||| |||||||||||||| | | |||||||||||||||||||||||||||  | |||| || |||| ||||||||||||    
T  24074512 aaccggaaagaggtctcgga-atgacatttacctcctaattttatttagcacgtttttgacagattatatttcatctctct 24074591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 104 - 244
Target Start/End: Original strand, 3050902 - 3051044
Alignment:
Q  104 atgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||| || ||||||||| ||||||    
T  3050902 atgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcaaacattcaccggaaagaggtctcggaaagagcatttaccacctaat 3051001  T
Q  204 tttatttagcacactattgata--ggttatgtttcatctctct 244  Q
    |||||||||||||||||||| |  |||||| ||||||||||||    
T  3051002 tttatttagcacactattgacacgggttatatttcatctctct 3051044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 48 - 242
Target Start/End: Original strand, 25340428 - 25340621
Alignment:
Q  48 tgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttg 147  Q
    |||||||||| || ||||||||||||||| |||||||| || | |||  ||||||||||||||||| || || ||||||| |||||||||||||||||||    
T  25340428 tgagaaataagtgctaccaacaagatcaatgatgtgtgattaagtgatttgatgatatgttacacccagtggaagatatttaagtcacttgatgatgttg 25340527  T
Q  148 atattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctct 242  Q
    |||||||| |||||||||||  ||||||||||| || || |||||||||||||||||||| ||| ||||||||||  || |||||||||||||||    
T  25340528 atattattcgaacattcaccataaagaggtctcagaaagtgcatttacctcctaatttta-ttaacacactattggcagattatgtttcatctct 25340621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 72 - 244
Target Start/End: Original strand, 25599159 - 25599334
Alignment:
Q  72 atcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacat---tcaccg 168  Q
    |||||||| ||| ||||||||||| ||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||   ||| ||    
T  25599159 atcaacgacgtgcggttcaatgacttgatggtatgttacatcgagtgggagataatcaagtcacttgatgatgttgatattattcgaacattcatcatcg 25599258  T
Q  169 caaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||  | ||||| ||||||||||||    
T  25599259 caaagaggtctcggaaagggcatttacgtcctaatttgatttaacacactattggcaagttatatttcatctctct 25599334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 32442146 - 32441970
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||| ||| ||||||||||||||||||||| | ||||||||||||| ||||||| ||||| | |  |||||||||||||||||||||||| ||||||||    
T  32442146 caacatgattaacgatgtgtggttcaatgactt-atgatatgttacatcgagcggaagataataa--tcacttgatgatgttgatattattcgaacattc 32442050  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    | | ||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||  | ||||||||| ||||||||    
T  32442049 atcccaaagaggtatcggaaagggcatttacctcttaattttatttagcacaccattggcaagttatgttttatctctct 32441970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 217
Target Start/End: Original strand, 30621226 - 30621324
Alignment:
Q  118 gggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacac 217  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| ||| ||||||||||||||||||||||| |||||    
T  30621226 gggagataatcaagtcacttgatgatgttgatattattcgaacattcatcg-aaagaggtctcggaaaggacatttacctcctaattttatttaacacac 30621324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 240
Target Start/End: Original strand, 1296556 - 1296684
Alignment:
Q  112 ccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttattta 211  Q
    |||||||||||||||||||||||||||||||| || ||||||||  || ||||||   |||||||||||||| ||| |||||||||||| ||||||||||    
T  1296556 ccgagcgggagatattcaagtcacttgatgatattaatattattcaaatattcacaataaagaggtctcggaaaggccatttacctccttattttattta 1296655  T
Q  212 gcacactattgataggttatgtttcatct 240  Q
     |||||||| |  ||||||| ||||||||    
T  1296656 ccacactatcggcaggttatatttcatct 1296684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 23180109 - 23179881
Alignment:
Q  17 caattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccga 115  Q
    |||| |||||||||| |||||||||| | | ||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||    
T  23180109 caataagctagtaaaataatcttataagctcgtgagaaataattgttaccaacaagatcaacgatgtgtgtttcaataacttgatgatatgttacaccga 23180010  T
Q  116 gcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcac 215  Q
    ||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||| |||||||||    
T  23180009 gcgagagatattcaaggcacttgataatgttgatattattcgaacattcaccgcaaagaggtcttggaaagggcattta-ctcctaatttaatttagcac 23179911  T
Q  216 actattgataggttatgtttcatctctctc 245  Q
    |||||||| | |||||||||||||||||||    
T  23179910 actattgacaagttatgtttcatctctctc 23179881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 26493889 - 26493710
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||| ||| |||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26493889 caacaagatgaacaatgtgtggttaaatgacttgatgatacgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 26493790  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  26493789 accgtaaagaggtctcggaaagggcatttacctcctaattttatttagcacgctattgacaggttatatttcatctctct 26493710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 9230352 - 9230578
Alignment:
Q  17 caattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccga 115  Q
    |||| |||||||||| |||||||||| |   || ||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||  ||    
T  9230352 caataagctagtaaaataatcttataagcccgttagaaaaaattgttaccaacatggtcaacgatgtgtggttcaatgacttgatgatatgttacataga 9230451  T
Q  116 gcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcac 215  Q
    |||||||||| |||||||| |||||||||||||||||||| ||||||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  9230452 gcgggagatactcaagtcatttgatgatgttgatattattcgaacattcatcgcaaagaggtatcgaaaagggcatttacctcctaattttatttagcac 9230551  T
Q  216 actattgataggttatgtttcatctct 242  Q
    |||||||| | | ||||||||||||||    
T  9230552 actattgacaaggtatgtttcatctct 9230578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 65 - 240
Target Start/End: Complemental strand, 27387481 - 27387306
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27387481 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 27387382  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 240  Q
    ||   ||||||||| |||| || |||||||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  27387381 actcgaaagaggtcgcggaaagagcatttacctcctaattttatttagcacgctattgacaggttatatttcatct 27387306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 19399978 - 19400153
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  19399978 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcgcttgatgatgttgatattattcgaacattc 19400077  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 240  Q
    ||   ||||||||| |||| |||| |||||||||||||||||||||||||| ||||||  ||||||| ||||||||    
T  19400078 actcgaaagaggtcgcggaaagggtatttacctcctaattttatttagcacgctattggcaggttatatttcatct 19400153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 65 - 244
Target Start/End: Original strand, 45197644 - 45197822
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||| ||||||||||||||||| ||||||||| || || ||||| ||||||||||||||||||||| |||||||||||| || ||||||||    
T  45197644 caacaagatcaacaatgtgtggttcaatgacttgatgatatatt-catcgagcaggagatattcaagtcacttgacgatgttgatattgttcgaacattc 45197742  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||| ||||||||||||||  ||||||||||| ||||||||||||||||||| |||||| |||||||| ||||||||||||    
T  45197743 accacaaagaggtctcggggagggcatttacatcctaattttatttagcaccctattggtaggttatatttcatctctct 45197822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 49 - 244
Target Start/End: Original strand, 8638598 - 8638795
Alignment:
Q  49 gagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttga 148  Q
    |||||| |||||||||||||||||||||||| |||||||| ||| || ||||||||||||| ||||| |  ||||||||||||||| |||||||| | ||    
T  8638598 gagaaagaattgttaccaacaagatcaacgacgtgtggtttaattacttgatgatatgttataccgaacaagagatattcaagtcatttgatgatatcga 8638697  T
Q  149 tattatttgaacattcaccgcaaaga-ggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgttt-catctctct 244  Q
    ||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |  | ||||||||| |||||||||    
T  8638698 tattattcgaacattcaacgcaaagagggtctcggaaagggcatttacctcctaattttatttagcacactatcggcaagttatgtttccatctctct 8638795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 65 - 240
Target Start/End: Complemental strand, 38575464 - 38575289
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    |||||| |||||| ||| |||||| || ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  38575464 caacaatatcaacaatgggtggttgaacgacttgatgatatgttacaccgagcgggagatattaaagtcacttgatgatgttgatattattcgaacattc 38575365  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 240  Q
    ||   ||||||||| |||| ||  ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  38575364 actcgaaagaggtcgcggaaagaacatttacctcctaattttatttagcacgctattgacaggttatatttcatct 38575289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 43727947 - 43728103
Alignment:
Q  17 caattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccga 115  Q
    |||| |||||||||| |||||||||| |  | ||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | |||    
T  43727947 caataagctagtaaaataatcttataagcctatgagaaagaattgttaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttatatcga 43728046  T
Q  116 gcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaa 172  Q
     |||||||||||||||||| ||||||||||||||||||||  |||||||| ||||||    
T  43728047 acgggagatattcaagtcagttgatgatgttgatattattcaaacattcatcgcaaa 43728103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 75 - 244
Target Start/End: Original strand, 18375416 - 18375583
Alignment:
Q  75 aacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaaga 174  Q
    ||||||||||||||||||||| ||||||||| |||||  ||||||||||||||||| ||||| ||| |||||||||||||| |||||||||  || || |    
T  18375416 aacgatgtgtggttcaatgacttgatgatatattacatggagcgggagatattcaaatcactagataatgttgatattattcgaacattca-tgcgaa-a 18375513  T
Q  175 ggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||||||| | ||||||||||| ||||||||  |||||||||||| ||| ||| ||||||||||| |||||    
T  18375514 ggtctcgaaaagggcatttacttcctaattcgatttagcacacttttggtagattatgtttcatttctct 18375583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 14088815 - 14088927
Alignment:
Q  132 tcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttat 231  Q
    ||||||||||||| ||||||||||  ||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||    
T  14088815 tcacttgatgatgctgatattattcaaacatccatcgcaaagaggtctcggaaaaggcatttacctcctaattttatttagcacactattgacaagttat 14088914  T
Q  232 gtttcatctctct 244  Q
     |||||| |||||    
T  14088915 atttcatatctct 14088927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 14398833 - 14398945
Alignment:
Q  132 tcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttat 231  Q
    ||||||||||||| ||||||||||  ||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||    
T  14398833 tcacttgatgatgctgatattattcaaacatccatcgcaaagaggtctcggaaaaggcatttacctcctaattttatttagcacactattgacaagttat 14398932  T
Q  232 gtttcatctctct 244  Q
     |||||| |||||    
T  14398933 atttcatatctct 14398945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 23804722 - 23804623
Alignment:
Q  17 caattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccga 115  Q
    |||| |||||||||| |||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||| |||||||||    
T  23804722 caataagctagtaaaataatcttataagtttgtgagaaagaatggttaccaacaagatcaacgatgtgtggttcaatgacttgttgatatattacaccga 23804623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 25491742 - 25491630
Alignment:
Q  132 tcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttat 231  Q
    |||||||||||||||||||||||| |||||||||| | |||||||||||  | | ||||||||| |||| |||||||||| ||||||||||| | |||||    
T  25491742 tcacttgatgatgttgatattattcgaacattcactgtaaagaggtctcaaaaaaggcatttacttcctgattttatttatcacactattgacatgttat 25491643  T
Q  232 gtttcatctctct 244  Q
     |||||| |||||    
T  25491642 atttcatatctct 25491630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 9557784 - 9557867
Alignment:
Q  161 attcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||   |||||| |||||||||||||    
T  9557784 attcaccgcaaagaggtctctgaaaggggatttacctcctaattttatttagcacactattcggaggttaagtttcatctctct 9557867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 25024596 - 25024702
Alignment:
Q  138 gatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttca 237  Q
    |||||||||||||   || | ||||||||| |||||||||||| || ||||||||||||||||||||||||| ||||   |||||| | ||||| |||||    
T  25024596 gatgatgttgataagtttcggacattcaccacaaagaggtctcagaaagggcatttacctcctaattttattaagcatgttattgacatgttatatttca 25024695  T
Q  238 tctctct 244  Q
    |||||||    
T  25024696 tctctct 25024702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 26782365 - 26782310
Alignment:
Q  189 catttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  26782365 catttacctcctaattttatttagcacactattgacaagttatgtttcagctctct 26782310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 10224015 - 10224070
Alignment:
Q  189 catttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||||||||||||||||||||||| |||||||| |  || |||| ||||||||||||    
T  10224015 catttacctcctaattttatttaccacactatcggcagattatatttcatctctct 10224070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 10868502 - 10868468
Alignment:
Q  189 catttacctcctaattttatttagcacactattga 223  Q
    |||||||||||||||||||||||||||||| ||||    
T  10868502 catttacctcctaattttatttagcacacttttga 10868468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 13152605 - 13152390
Alignment:
Q  29 aaataatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattc 128  Q
    ||||||||||||| |   |||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  13152605 aaataatcttataagcccgtgagaaagaattgttaccaacatgatcaacgctgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattc 13152506  T
Q  129 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 228  Q
    |||||| |||||||||||| |||||||  |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||    
T  13152505 aagtcatttgatgatgttggtattattccaacattcatcgcaaagaggtctcggaaagggcatttacctcctaattttatttagcacactattgacaagt 13152406  T
Q  229 tatgtttcatctctct 244  Q
    ||||||||||||||||    
T  13152405 tatgtttcatctctct 13152390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 14446784 - 14447011
Alignment:
Q  17 caattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccga 115  Q
    |||| |||||||||| |||||||||| || || |||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |    
T  14446784 caataagctagtaaaataatcttataagtctgcgagaaagaattgttacca-caagatcaacgatttgtggttcaatgacttgatgatatgttacaccaa 14446882  T
Q  116 gcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcac 215  Q
    | | ||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  14446883 gagagagatattcaagtcacttgatgatgttgatattattctaacattcactgcaaagaggtctcggaaaggacattcacctcctaattttatttagcac 14446982  T
Q  216 actattgataggttatgtttcatctctct 244  Q
    ||||||||| |||||  ||||||||||||    
T  14446983 actattgatcggttacatttcatctctct 14447011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 49 - 244
Target Start/End: Original strand, 27190755 - 27190950
Alignment:
Q  49 gagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttga 148  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  27190755 gagaaagaattgttacaaacaagatcaacgatgtgtggttcaatgacttgatgatatgttgcacctagcgggagatattcaagtcacttgatgatgttga 27190854  T
Q  149 tattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||||| | ||| |||||||||||||| ||||| || ||| |||||||||||||||||||||||| |||||||||  | ||||||||||||||||||    
T  27190855 tattactcgaatattcaccgcaaagatgtctcagaaaggacatttacctcctaattttatttagtacactattggcaagttatgtttcatctctct 27190950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 30791633 - 30791454
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||  ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  30791633 caacaagatcaagaatgagtggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgacattgatattattcgaacattc 30791534  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  30791533 accgcaaagaggtctcggaaagggcatttaccacctaattttatttagcacgctattgacaggttatatttcatctctct 30791454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 24333665 - 24333896
Alignment:
Q  17 caattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccga 115  Q
    |||| |||||||||| |||||||||| |   |||||||| ||||||||||||||||||||||||||| || ||||||||| | |||||||||||||| ||    
T  24333665 caataagctagtaaaataatcttataagcccgtgagaaagaattgttaccaacaagatcaacgatgtatgattcaatgactttatgatatgttacactga 24333764  T
Q  116 gcgggagatattcaagtcacttgatgatgttgatattatttgaac---attcaccgcaaagaggtctcggatagggcatttacctcctaattttatttag 212  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||   ||||||| ||||||||||||||| || | ||||||||| | |||||||||||    
T  24333765 gcgggagatattcaagtcacttgatgatgttaatattattcgaacattattcaccacaaagaggtctcggaaagagaatttacctcatgattttatttag 24333864  T
Q  213 cacactattgataggttatgtttcatctctct 244  Q
    |||||||||||  |||||||||||||||||||    
T  24333865 cacactattgaccggttatgtttcatctctct 24333896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 61 - 244
Target Start/End: Original strand, 9256385 - 9256568
Alignment:
Q  61 ttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaac 160  Q
    ||||||| | |||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  9256385 ttaccaatatgatcaatgatgtgtggtttaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataattcgaac 9256484  T
Q  161 attcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||||| ||||||||||||||| | | | ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  9256485 attcatcgcaaagaggtctcgcaaatgacatttacctcctaattttatttagcacactattgacaagttatgtttcatctctct 9256568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 65 - 242
Target Start/End: Complemental strand, 16532806 - 16532630
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||| || | ||||||||||||||||||||||||||||||||||||  |||||||    
T  16532806 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttataccaagtgagagatattcaagtcacttgatgatgttgatattattcaaacattc 16532707  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctct 242  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||| | |||||| ||||||||||    
T  16532706 accgcaaagagatatcggaaagggcatttacctcctaattttatttagcacgctattgct-ggttatatttcatctct 16532630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 28846572 - 28846784
Alignment:
Q  17 caattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccga 115  Q
    |||| |||||||||| |||||||||| ||  |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |   ||| |||    
T  28846572 caataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcga 28846668  T
Q  116 gcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcac 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||             |||||||||||||| ||||||||||||||||    
T  28846669 gcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaa-------------agggcatttacctcataattttatttagcac 28846755  T
Q  216 actattgataggttatgtttcatctctct 244  Q
    ||| |||| || |||||||||||||||||    
T  28846756 acttttgacagattatgtttcatctctct 28846784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 21958512 - 21958687
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||| || ||||||| |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||     
T  21958512 caacaagatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcaggagatattcgagtcacttgatgatgttgatattattcgaacatta 21958611  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 240  Q
    ||   ||||||||| |||| |||| |||||||||||||||||||||||||| ||||||  ||||||| ||||||||    
T  21958612 actcaaaagaggtcgcggaaagggaatttacctcctaattttatttagcacgctattggcaggttatatttcatct 21958687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 10014571 - 10014431
Alignment:
Q  104 atgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaat 203  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||  ||||||||||| |||||| | | ||| |||||||||||||||||||    
T  10014571 atgttacaccgagcggaagatattcatgtcacttgatgatgttgatattattcaaacattcaccggaaagagattttggaaagggcatttacctcctaat 10014472  T
Q  204 tttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||||||||||||| |||||| |  |||| ||||||||||||    
T  10014471 tttatttagcacattattgacatattatatttcatctctct 10014431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 32372022 - 32372129
Alignment:
Q  129 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 228  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||  | ||| |||||||||||||||||||||||||||||||||| |||||    
T  32372022 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtctcaaaaaggtcatttacctcctaattttatttagcacactattggtaggt 32372121  T
Q  229 tatgtttc 236  Q
    ||| ||||    
T  32372122 tatatttc 32372129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 32359486 - 32359601
Alignment:
Q  129 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 228  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||  | | | |||||||||||||||||||||||||||||||||| ||| |    
T  32359486 aagtcacttgatgatgttgatattattcgaacattcactgcaaagaggtctcaaaaatgtcatttacctcctaattttatttagcacactattggtagat 32359585  T
Q  229 tatgtttcatctctct 244  Q
    ||| ||||||||||||    
T  32359586 tatatttcatctctct 32359601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 40146116 - 40146006
Alignment:
Q  134 acttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgt 233  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||  || ||||||    
T  40146116 acttgatgatgttgatattattcgaacattcacaacaaagaggtctcggaaatggcatctacctcctaattttatttagcacactattggcagattatgt 40146017  T
Q  234 ttcatctctct 244  Q
    |||||||||||    
T  40146016 ttcatctctct 40146006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 32342880 - 32342995
Alignment:
Q  129 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 228  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| |||||||  | ||| ||||||||||||||||||||||||||||| |||| || ||    
T  32342880 aagtcacttgatgatgttgatattattcgaacattcactgcaaaaaggtctcaaaaaggtcatttacctcctaattttatttagcacaccattggtatgt 32342979  T
Q  229 tatgtttcatctctct 244  Q
    ||| ||||||||||||    
T  32342980 tatatttcatctctct 32342995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 32355367 - 32355482
Alignment:
Q  129 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 228  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| |||||||  | ||| ||||||||||||||||||||||||||||| |||| || ||    
T  32355367 aagtcacttgatgatgttgatattattcgaacattcactgcaaaaaggtctcaaaaaggtcatttacctcctaattttatttagcacaccattggtatgt 32355466  T
Q  229 tatgtttcatctctct 244  Q
    ||| ||||||||||||    
T  32355467 tatatttcatctctct 32355482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 82 - 245
Target Start/End: Original strand, 42446935 - 42447105
Alignment:
Q  82 tgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttg-----aacattcacc--gcaaaga 174  Q
    ||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||||||||| ||| ||||||||||     ||||||||||  | ||| |    
T  42446935 tgtggttgaatgacgtgattatatgttacatcgagcggaagatattcaagtcacttgatgacgtttatattatttgaacataacattcaccgtgtaaaaa 42447034  T
Q  175 ggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctctc 245  Q
    ||| ||| | |  |||||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||    
T  42447035 ggtatcgaaaaatgcatttacctcctaattttatttagcacactaatgacaagttatatttcatctctctc 42447105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 10467786 - 10467930
Alignment:
Q  87 ttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatag 186  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||| |||||| ||             ||||| ||    
T  10467786 ttcaatgacttgatgatatgttacatcgagcgggagataatcaagtcatttgatgatgttgatattattcgaacatgca-------------tcggaaag 10467872  T
Q  187 ggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    || ||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||    
T  10467873 ggtatttacctcataattttatttagcacaatattgacaagttatgtttcatctctct 10467930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 34228338 - 34228232
Alignment:
Q  131 gtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggtta 230  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||| |  ||||||||||||| |||||||||| |||| |||||| | ||||    
T  34228338 gtcacttgatgatgttgatattattcgaacatttaccacaaagaggtcttggaaattgcatttacctcctcattttatttatcacattattgacatgtta 34228239  T
Q  231 tgtttca 237  Q
    | |||||    
T  34228238 tatttca 34228232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 244
Target Start/End: Complemental strand, 2826407 - 2826302
Alignment:
Q  136 ttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgttt 235  Q
    ||||| |||||||||||||| ||||||||||||||||||||| ||||   |||||||||    |||||||||||||||||||||| |||| ||||| | |    
T  2826407 ttgataatgttgatattattcgaacattcaccgcaaagaggtatcggcatgggcattta---tctaattttatttagcacactatggatatgttatatgt 2826311  T
Q  236 catctctct 244  Q
    ||| |||||    
T  2826310 catgtctct 2826302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 24592387 - 24592333
Alignment:
Q  190 atttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  24592387 atttacctcctaattttatttagcacactattggcaggttatgtttcatctctct 24592333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 3435409 - 3435443
Alignment:
Q  189 catttacctcctaattttatttagcacactattga 223  Q
    |||||||||||||| ||||||||||||||||||||    
T  3435409 catttacctcctaactttatttagcacactattga 3435443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 40470521 - 40470487
Alignment:
Q  189 catttacctcctaattttatttagcacactattga 223  Q
    ||||||||| |||||||||||||||||||||||||    
T  40470521 catttaccttctaattttatttagcacactattga 40470487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 135029 - 134850
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  135029 caacaagatgaacaatgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 134930  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  134929 accggaaagaggtctcggaaagggcatttacctcctaattttatttagcacgctattgataggttatatttcatctctct 134850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 17691 - 17917
Alignment:
Q  17 caattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccga 115  Q
    |||| |||||||||| |||||||||| | |  | |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||| |||    
T  17691 caataagctagtaaaataatcttataagctcattagaaataattgttatcaacaagatcaacgatgtgtggttcaatgacttgatgatacgttacatcga 17790  T
Q  116 gcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcac 215  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||| |||||| ||||||||||||||||||||    
T  17791 gcgggagatatttaagtcacttgctgatgttgatattattcgaacattcaccgcaaagaggtctccgaaaggacatttaactcctaattttatttagcac 17890  T
Q  216 actattgataggttatgtttcatctct 242  Q
    |||||||| || ||| |||||||||||    
T  17891 actattgacagattacgtttcatctct 17917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 47 - 244
Target Start/End: Original strand, 12539556 - 12539752
Alignment:
Q  47 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 146  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||   ||||||||||||||||||||||||||    
T  12539556 gtgagaaagaattgttaccaacaagatcaacaatgcgtggttcaatgacttgatgatatgtta-accgagcataagatattcaagtcacttgatgatgtt 12539654  T
Q  147 gatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||||||||| ||||||||||||||||||||||| ||| ||  ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  12539655 gatattattcgaacattcaccgcaaagaggtcttggaaagaacatttacctcctaattttatttagcacactattgacacgttatgtttcatctctct 12539752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 19952006 - 19951827
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||| |||||||| |||||||||||| ||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  19952006 caacaagattaacgatgtatggttcaatgacttgacgatatgtcacactgagcgagagatattcaagtcacttgatgatgttgatattattcgaacattc 19951907  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||||||||||||||||| | ||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||| |||||    
T  19951906 accgcaaagaggtctcgaaaagggcatttaccttctaatttaatttagcacactattgacaggttatatttcatatctct 19951827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 69 - 242
Target Start/End: Complemental strand, 35649831 - 35649658
Alignment:
Q  69 aagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccg 168  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||| |    
T  35649831 aagatcaacgatgtgttgttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcatttgatgatgttgatattattgaaacattcactg 35649732  T
Q  169 caaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctct 242  Q
    ||||||| ||||| | ||| ||||||| |||||||||||||||| ||| | |||||||||||| ||||||||||    
T  35649731 caaagagatctcgaaaaggacatttacttcctaattttatttagtacatttttgataggttatatttcatctct 35649658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 33453363 - 33453184
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgtt-acaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacatt 163  Q
    ||||||||||||||||||||||| ||||||| | || ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  33453363 caacaagatcaacgatgtgtggt-caatgacttcatcatatgtttacaccgagcgggagatatttaagtcacttgatgatgttgatattattcgaacatt 33453265  T
Q  164 caccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||||||||| || || || ||||||||||||||||||||||||||| |||||||  | ||||| |||||| |||||    
T  33453264 caccgcaaagaggtatcagaaagagcatttacctcctaattttatttagcagactattggcaagttatatttcatatctct 33453184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 48 - 233
Target Start/End: Complemental strand, 34317659 - 34317480
Alignment:
Q  48 tgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttg 147  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||| |||||||||    
T  34317659 tgagaaagaattgttaccaacaagatcaatgatgtgtggttcaatgacttgatgatatgttacaccgagtaagagatattcaagtcacttcatgatgttg 34317560  T
Q  148 atattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgt 233  Q
    ||||| ||       ||||||||||||||||||  | || |||||||||||||||||||| ||||||||||||||  |||||||||    
T  34317559 atattgtt------ctcaccgcaaagaggtctcaaaaagagcatttacctcctaattttaattagcacactattggcaggttatgt 34317480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 22483549 - 22483705
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||| ||| |||  ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||    
T  22483549 caacaagattaacaatgaatggttaaatgacttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacattc 22483648  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 221  Q
    ||||||||||  ||||||| |||||||||||||||||||||||| |||||| |||||    
T  22483649 accgcaaagaaatctcggaaagggcatttacctcctaattttatctagcacgctatt 22483705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 34526352 - 34526508
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||| ||| ||| |||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||    
T  34526352 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacattc 34526451  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 221  Q
    ||||||||||  ||||||| |||||||||||||||||||||||| |||||| |||||    
T  34526452 accgcaaagaaatctcggaaagggcatttacctcctaattttatctagcacgctatt 34526508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 22464670 - 22464826
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||| ||| ||| |||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||  |||||||    
T  22464670 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcaaacattc 22464769  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 221  Q
    ||||||||||  ||||| | |||||||||||||||||||||||| |||||| |||||    
T  22464770 accgcaaagaaatctcgaaaagggcatttacctcctaattttatctagcacgctatt 22464826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 13308748 - 13308840
Alignment:
Q  97 tgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggc 189  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||| |||||    
T  13308748 tgatgatatgttacaccgagcgagagatattcaagtcacttgatgatgttgatattattcgaacattcaccataaagaggtctcggaaagggc 13308840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 26656452 - 26656337
Alignment:
Q  129 aagtcacttgatgat-gttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgatagg 227  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||| |||  || ||| |||||||||||||||||||||| ||||||||||  ||||    
T  26656452 aagtcacttgacgattgttgatattattcgaacattcaccgcaaagagatcttaga-aggtcatttacctcctaattttatttcgcacactattagtagg 26656354  T
Q  228 ttatgtttcatctctct 244  Q
    |||| ||||||||||||    
T  26656353 ttatatttcatctctct 26656337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 7886758 - 7886654
Alignment:
Q  138 gatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttca 237  Q
    ||||||||||||  ||||  ||||||||||||||||| || || || ||| || |||||||||||||||||||||||||||||||||| ||||| |||||    
T  7886758 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcacactattgatatgttatatttca 7886661  T
Q  238 tctctct 244  Q
     ||||||    
T  7886660 cctctct 7886654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 18426072 - 18425953
Alignment:
Q  129 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaatttt----atttagcacactattgat 224  Q
    |||||||||||| |||||||||||||| |||||||||||| |||||||||||  | | |  |||||||||||||||||    ||||| |||||||||||     
T  18426072 aagtcacttgataatgttgatattattcgaacattcaccgtaaagaggtctcaaaaatgttatttacctcctaattttattaatttatcacactattgac 18425973  T
Q  225 aggttatgtttcatctctct 244  Q
    | ||||| ||||||||||||    
T  18425972 aagttatatttcatctctct 18425953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 244
Target Start/End: Original strand, 34907624 - 34907761
Alignment:
Q  104 atgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaat 203  Q
    |||||||||||| || |||||| ||| ||||||||||| ||||||||| |||  |||||||| || | ||| || ||| | ||||||||||||||||||     
T  34907624 atgttacaccgaacgagagatactcaggtcacttgatggtgttgatataattcaaacattcatcggagagaagtttcgaaaagggcatttacctcctaa- 34907722  T
Q  204 tttatttagcacactattgataggttatgtttcatctctct 244  Q
      ||||||  ||||||||||  |||||| ||||||||||||    
T  34907723 --tatttaagacactattgacgggttatatttcatctctct 34907761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 31392485 - 31392554
Alignment:
Q  150 attatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacacta 219  Q
    |||||| ||||||| ||| ||||||||||||| | |||||||||||||| ||||||||||||||||||||    
T  31392485 attattcgaacatttacctcaaagaggtctcgaaaagggcatttacctcttaattttatttagcacacta 31392554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 31392927 - 31392975
Alignment:
Q  196 ctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||    
T  31392927 ctcctaattttatttagcacactattgacaggttatgttacatctctct 31392975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 13309709 - 13309768
Alignment:
Q  185 agggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||||||||| |||| ||||||||||||||||||| || |||| ||||||||||||    
T  13309709 agggcatttacctcataatattatttagcacactattgacagattatatttcatctctct 13309768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 45121334 - 45121389
Alignment:
Q  167 cgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattg 222  Q
    ||||||||||||||||| | | |||||||||||||||||||||||| |||||||||    
T  45121334 cgcaaagaggtctcggaaaagacatttacctcctaattttatttagaacactattg 45121389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 45261895 - 45261841
Alignment:
Q  190 atttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||||| ||||||||||||||||||||||||||   | ||||||||||| ||||||    
T  45261895 atttaactcctaattttatttagcacactattagaatgttatgtttcacctctct 45261841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 1954952 - 1955008
Alignment:
Q  188 gcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||| | |||||||||||||||||  |||||| || |||| ||||||||||||    
T  1954952 gcatttactttctaattttatttagcacgttattgacagattatatttcatctctct 1955008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 3055433 - 3055661
Alignment:
Q  17 caattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccga 115  Q
    |||| |||||||||| |||||||||| |   |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||    
T  3055433 caataagctagtaaaataatcttataagcccgtgagaaagaattgttaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcga 3055532  T
Q  116 gcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcac 215  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||| ||||||||  | | |||||||||||||||||||||||||||||    
T  3055533 gcgggagatattcaagtcatttgatgatgttgatattattcgaacattccgcgcaatgaggtctcataaatggcatttacctcctaattttatttagcac 3055632  T
Q  216 actattgataggttatgtttcatctctct 244  Q
    |||||||| |  ||||||||||| |||||    
T  3055633 actattgacaatttatgtttcatatctct 3055661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 23244803 - 23244566
Alignment:
Q  8 aagccctaacaattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatg 106  Q
    |||||||  |||| |||||||||| |||||||||| |    ||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  23244803 aagccctgtcaataagctagtaaaataatcttataagccaatgagaaagaattgttaccaacaagatcaacgatgtgtcgttcaatgacttgatgatatg 23244704  T
Q  107 ttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaatttt 206  Q
    |||   ||||||| || ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| || ||||||| ||||| ||||||||    
T  23244703 ttatgtcgagcggaagttattctagtcacttgatgatgttgatattatttgaacattaaccgcaacgaggtctcagaaagggcatgtacctgctaatttt 23244604  T
Q  207 atttagcacactattgataggttatgtttcatctctct 244  Q
    ||||| ||||||||||| || |||| ||||||||||||    
T  23244603 atttaccacactattgacagattatatttcatctctct 23244566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 48 - 244
Target Start/End: Original strand, 8785765 - 8785961
Alignment:
Q  48 tgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttg 147  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| | |||||||||||||||| ||| |||||||| |||    
T  8785765 tgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgataatatattacatcaagcgggagatattcaattcagttgatgatattg 8785864  T
Q  148 atattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||| |||||||||||||||| |||||||| | ||||   ||||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  8785865 atattattcgaacattcaccgcaaataggtctcgaaaagggttcttacctcctaattttatttagcatattattgacaggttatgtttcatctctct 8785961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 65 - 244
Target Start/End: Original strand, 203851 - 204029
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||| ||||||  |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  203851 caacaagatcaacaatgtgta-taaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 203949  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |  |||| ||||||||||||    
T  203950 accggaaagaggtctcggaaaggacatttacctcctaattttatttagcacactattgacaaattatatttcatctctct 204029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 48 - 244
Target Start/End: Complemental strand, 27168987 - 27168799
Alignment:
Q  48 tgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttg 147  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||| ||||||    
T  27168987 tgagaaataattgttacaaacaagatcaacgatgtgtggttcaataa--------tatgttacaccgagcgggagatattcaagtcacttgataatgttg 27168896  T
Q  148 atattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||| |||||||||||| || ||||||||  | ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  27168895 atattattcgaacattcaccgaaatgaggtctcataaagggcatttacctcctaattttatttagcacactattggatggttatgtttcatctctct 27168799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 1280382 - 1280522
Alignment:
Q  69 aagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccg 168  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1280382 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 1280481  T
Q  169 caaagaggtctcggatagggcatttacctcctaattttatt 209  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  1280482 caaagaggtctcggaaaaggcatttacctcctaattttatt 1280522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 11852666 - 11852894
Alignment:
Q  17 caattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccga 115  Q
    |||| |||||||||| |||||||||| ||  |||||||| |||| ||||||||||||| || |||||||||||||||||| |||||||||||||||||||    
T  11852666 caataagctagtaaaataatcttataagtccgtgagaaagaattattaccaacaagatgaaagatgtgtggttcaatgacttgatgatatgttacaccga 11852765  T
Q  116 gcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcac 215  Q
     ||||||||||| || |||||||||||||||||||||||| ||||||| | | |||||||||||  || || | |||||||| |||||||||||||||||    
T  11852766 acgggagatatttaactcacttgatgatgttgatattattcgaacatttaacacaaagaggtctaagaaagagtatttaccttctaattttatttagcac 11852865  T
Q  216 actattgataggttatgtttcatctctct 244  Q
    |||||||| |  |||| ||||||||||||    
T  11852866 actattgacaaattatctttcatctctct 11852894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 26540830 - 26540674
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||| ||| ||| |||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||    
T  26540830 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacattc 26540731  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 221  Q
    ||||||||||  |||| || |||||||||||||||||||||||| |||||| |||||    
T  26540730 accgcaaagaaatctcagaaagggcatttacctcctaattttatctagcacgctatt 26540674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 2228957 - 2229094
Alignment:
Q  107 ttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagagg-tctcggatagggcatttacctcctaattt 205  Q
    |||||| |||||| ||||||| |||||| |||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||    
T  2228957 ttacactgagcggaagatatttaagtcatttgatgatgttgatattatttgaacattcatcgcaaagaggttctagga-agggcatttacctcctaattt 2229055  T
Q  206 tatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||||| |||||| |||||||| ||||||||||||    
T  2229056 tatttagcacgctattggtaggttatatttcatctctct 2229094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 114 - 244
Target Start/End: Complemental strand, 22713025 - 22712895
Alignment:
Q  114 gagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagc 213  Q
    ||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| || || ||||||||||||||||||||||||||    
T  22713025 gagcgggggatattcatgtcacttgatgatgttgatattattcaaacattcaccgcaaagaggtctcagaaagagcatttacctcctaattttatttagc 22712926  T
Q  214 acactattgataggttatgtttcatctctct 244  Q
    |||||||||  | |||||||| |||||||||    
T  22712925 acactattgtcatgttatgttacatctctct 22712895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 84 - 244
Target Start/End: Original strand, 22541905 - 22542065
Alignment:
Q  84 tggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcgga 183  Q
    ||||| |||||| ||||||||||||||| ||| ||| |||||||||||||||| ||||||||| |||||||| |||||||| |   ||||||||| ||||    
T  22541905 tggttgaatgacttgatgatatgttacatcgaacggaagatattcaagtcactcgatgatgttaatattattcgaacattccctcgaaagaggtcgcgga 22542004  T
Q  184 tagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
     |||||||||||||| |||||||||||||||| ||||||  ||||||| |||| |||||||    
T  22542005 aagggcatttacctcataattttatttagcacgctattgtcaggttatatttcttctctct 22542065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 19519053 - 19518970
Alignment:
Q  129 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttag 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| ||| |||||||| |||||||||||||||    
T  19519053 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtattggaaaggtcatttaccacctaattttatttag 19518970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 192060 - 192122
Alignment:
Q  167 cgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggtt 229  Q
    ||||||||||| ||||| | |  |||||||| ||||||||||||| |||||||||||||||||    
T  192060 cgcaaagaggtttcggaaaagatatttaccttctaattttatttaacacactattgataggtt 192122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 38269442 - 38269409
Alignment:
Q  189 catttacctcctaattttatttagcacactattg 222  Q
    |||||||||||||||||||||| |||||||||||    
T  38269442 catttacctcctaattttatttggcacactattg 38269409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 28801427 - 28801467
Alignment:
Q  189 catttacctcctaattttatttagcacactattgataggtt 229  Q
    |||||| |||||||||||||||||| ||||||||| |||||    
T  28801427 catttaactcctaattttatttagctcactattgacaggtt 28801467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 3857116 - 3856874
Alignment:
Q  1 agttataaagccctaacaattagctagtaaa-taatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtga 99  Q
    |||||| |||||||  |||| |||||||||| |||||||||| |   |||||||||||||||||||| ||||||||||||||||||||| |||||| |||    
T  3857116 agttatcaagccctgtcaataagctagtaaaataatcttataagcccgtgagaaataattgttaccatcaagatcaacgatgtgtggttaaatgacttga 3857017  T
Q  100 tgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcc 199  Q
    ||| ||||||| | ||| ||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||| || ||   ||||||||||    
T  3857016 tgacatgttactcagagtgggagatattcaagtcatttgatgatgttgatattattcaaacattcaccgcaaagaggtctcagaaagaaaatttacctcc 3856917  T
Q  200 taattttatttagcacactattgataggttatgtttcatctct 242  Q
    ||||||||||||||||| |||||  | || |||||||||||||    
T  3856916 taattttatttagcacattattggcatgtaatgtttcatctct 3856874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 31989029 - 31989204
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31989029 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 31989128  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 240  Q
    ||   ||||||||| |||| ||||||||||||||||||||||||||||||| | ||| | ||||||| ||||||||    
T  31989129 actcgaaagaggtcgcggaaagggcatttacctcctaattttatttagcacgccattaacaggttatatttcatct 31989204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 65 - 244
Target Start/End: Original strand, 43137127 - 43137305
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43137127 caacaagatcaacgatgtatggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 43137226  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
     |||| |||||||||| || | || |||||||||||||||||||||||||||||||||  || |||| |||||| |||||    
T  43137227 gccgc-aagaggtctcagaaaaggtatttacctcctaattttatttagcacactattggcagattatatttcatatctct 43137305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 47 - 235
Target Start/End: Original strand, 51261961 - 51262149
Alignment:
Q  47 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 146  Q
    |||| ||| |||||||||||||||||||||||| ||||||| ||||||  ||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  51261961 gtgaaaaagaattgttaccaacaagatcaacgaagtgtggtacaatgaattgatgatatgttacactaagcggaagatattcaagtcacttgatgatgtt 51262060  T
Q  147 gatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgttt 235  Q
    ||||||||| ||||||||| || |||||||||| | | ||  ||||||||||||||||||||||||||||||||||| |||||||||||    
T  51262061 gatattattcgaacattcatcgtaaagaggtcttgaaaagaacatttacctcctaattttatttagcacactattgacaggttatgttt 51262149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 53710398 - 53710573
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||| |||  ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53710398 caacaagatcaacaatggatggttgaatgacttgatgatctgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 53710497  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 240  Q
    ||   ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||| ||||    
T  53710498 actcgaaagaggtcacggaaagggcatttacctcctaattttatttagcacgctattgacaggttatattttatct 53710573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 203
Target Start/End: Original strand, 15667956 - 15668111
Alignment:
Q  48 tgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttg 147  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15667956 tgagaaagaattgttaccaacaagatcaaggatgtgtggttcaataacttgatgatatgttataccgagcgggagatattcaagtcacttgatgatgttg 15668055  T
Q  148 atattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaat 203  Q
    |||||||| |||||| |||  ||||||||| ||||| | |||||||||||||||||    
T  15668056 atattattcgaacatgcacaacaaagaggtatcggaaaaggcatttacctcctaat 15668111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 65 - 240
Target Start/End: Complemental strand, 24908568 - 24908393
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  24908568 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccaagcaggagatattcaagtcgcttgaagatgttgatattattcgaacattc 24908469  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 240  Q
    ||   ||||||||| |||| |||| |||||||||||||||||||||||||| ||||| | ||||||| ||||||||    
T  24908468 actcgaaagaggtcgcggaaagggtatttacctcctaattttatttagcacgctattcacaggttatatttcatct 24908393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 37382044 - 37381865
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    |||||||||||||||||||||||| ||||||  |||||||| |||||| ||||  ||||||||||||||| ||||||||||| |||||||| ||||||||    
T  37382044 caacaagatcaacgatgtgtggttaaatgactcgatgatatattacactgagcatgagatattcaagtcatttgatgatgtttatattattcgaacattc 37381945  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    || |||||||||||||||| | | ||||| ||||||||||||||| ||||| ||||||| ||||||| |||||| |||||    
T  37381944 actgcaaagaggtctcggaaatgacatttgcctcctaattttattcagcacgctattgacaggttatatttcatatctct 37381865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 136 - 244
Target Start/End: Complemental strand, 24988917 - 24988809
Alignment:
Q  136 ttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgttt 235  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||  || ||||||||    
T  24988917 ttgatgatgttgatattattcgaacattcaccgcaaagaggtctcggaaagggcatgtatctcctaattttatttagcacactattgccagattatgttt 24988818  T
Q  236 catctctct 244  Q
    |||||||||    
T  24988817 catctctct 24988809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 22934910 - 22934797
Alignment:
Q  129 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 228  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||  ||||||||||||  |    
T  22934910 aagtcacttgatgatgttgatattattagaacattcaccgcaaagaggtctcggaaaggtcatttacctcttaattttgtttaagacactattgatatat 22934811  T
Q  229 tatgtttcatctct 242  Q
    ||| ||||||||||    
T  22934810 tatatttcatctct 22934797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 9743379 - 9743447
Alignment:
Q  176 gtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||| || | ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  9743379 gtctcggagagagtatttacctcgtaattttatttagcacactattggtaggttatgtttcatctctct 9743447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 43585836 - 43585907
Alignment:
Q  84 tggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatt 155  Q
    ||||| |||||| |||||||||||||||||||||||||||||| ||||| |||||| |||||| ||||||||    
T  43585836 tggttgaatgacttgatgatatgttacaccgagcgggagatatccaagttacttgacgatgttaatattatt 43585907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 38282510 - 38282563
Alignment:
Q  168 gcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 221  Q
    |||||||||||||||| || ||||||||||| ||||||||||||||||||||||    
T  38282510 gcaaagaggtctcggaaagagcatttacctcataattttatttagcacactatt 38282563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 51408664 - 51408609
Alignment:
Q  185 agggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 240  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||    
T  51408664 agggcatttacctcctaattttatttagcacgctattgacatgttatatttcatct 51408609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 5135410 - 5135443
Alignment:
Q  190 atttacctcctaattttatttagcacactattga 223  Q
    ||||||||| ||||||||||||||||||||||||    
T  5135410 atttacctcataattttatttagcacactattga 5135443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 43585933 - 43585965
Alignment:
Q  189 catttacctcctaattttatttagcacactatt 221  Q
    ||||||||||||||||||||||||||| |||||    
T  43585933 catttacctcctaattttatttagcacgctatt 43585965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 65 - 244
Target Start/End: Original strand, 259918 - 260097
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||  ||||||||||| ||||||||    
T  259918 caacaagatcaacaatgagtggttcaatgacttgatgatatgttacatcgagcgggatatattcaagtcacttgatgacattgatattattcgaacattc 260017  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    ||||||||||||||||||| | |||||||||| |||||||||||||||||| ||||||| || |||| ||||||||||||    
T  260018 accgcaaagaggtctcggaaatggcatttaccacctaattttatttagcacgctattgacagattatatttcatctctct 260097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 435566 - 435344
Alignment:
Q  29 aaataatcttataggtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtg-----atgatatgttacaccgagcgggaga 123  Q
    ||||||||||||| | | |||||||| |||||||||||||||||||||  |||||||| |||||||| ||     ||||||||||||||||||||| |||    
T  435566 aaataatcttataagctcgtgagaaaaaattgttaccaacaagatcaataatgtgtggctcaatgacttgatgatatgatatgttacaccgagcggaaga 435467  T
Q  124 tattcaagtcacttgatgatgttgatattatttgaac--attcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 221  Q
    ||||||||||||||||| |||||||||||||| ||||  ||| ||||| ||||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  435466 tattcaagtcacttgattatgttgatattattagaacatattaaccgcgaagaggtctcgaaaaggacatttacctcctaattttatttagcacactatt 435367  T
Q  222 gataggttatgtttcatctctct 244  Q
    |  || |||| |||||| |||||    
T  435366 gtcagattatatttcatatctct 435344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 65 - 240
Target Start/End: Complemental strand, 214336 - 214161
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||||||| || ||||||| |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||     
T  214336 caacaagatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcaggagatattcgagtcacttgatgatgttgatattattcgaacatta 214237  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 240  Q
    ||   ||||||||| |||| |||| |||||||||||||||||||||||||| ||||||  ||||||| ||||||||    
T  214236 actcaaaagaggtcgcggaaagggaatttacctcctaattttatttagcacgctattggcaggttatatttcatct 214161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 15814 - 15970
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||| ||| ||| |||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||    
T  15814 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacattc 15913  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 221  Q
    ||||||||||  ||||||| |||||||||||||||||||||||| |||||| |||||    
T  15914 accgcaaagaaatctcggaaagggcatttacctcctaattttatctagcacgctatt 15970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 99 - 244
Target Start/End: Original strand, 1430 - 1575
Alignment:
Q  99 atgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctc 198  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||  |||||||||||||||| | ||||||| ||||    
T  1430 atgatatgttacaccgagcgggagatattcaaatcacttgatgatgttgatattattcgaacattcattgcaaagaggtctcggaaatggcatttgcctc 1529  T
Q  199 ctaattttatttagcacactattgataggttatgtttcatctctct 244  Q
    |||||||||||||||| ||||| |  | | ||||||||||||||||    
T  1530 ctaattttatttagcatactatcggcatgctatgtttcatctctct 1575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 197105 - 197261
Alignment:
Q  65 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 164  Q
    ||||||||| ||| ||| |||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||  |||||||    
T  197105 caacaagattaacaatgagtggttaaatgaattgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcaaacattc 197204  T
Q  165 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 221  Q
    ||||||||||  ||||| | |||||||||||||||||||||||| |||||| |||||    
T  197205 accgcaaagaaatctcgaaaagggcatttacctcctaattttatctagcacgctatt 197261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 954 - 1062
Alignment:
Q  136 ttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgttt 235  Q
    |||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||  || ||||||||    
T  954 ttgatgatgttgatattattcgaacattcaccgcaaagaggtctccgaaagggcatttatctcctaattttatttagcacactattgccagattatgttt 1053  T
Q  236 catctctct 244  Q
    |||||||||    
T  1054 catctctct 1062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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