View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1829_low_8 (Length: 247)
Name: NF1829_low_8
Description: NF1829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1829_low_8 |
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| [»] chr8 (6 HSPs) |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 7035499 - 7035271
Alignment:
| Q |
19 |
aatttgctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7035499 |
aatttgctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatcaatgatttttc |
7035400 |
T |
|
| Q |
119 |
aattgctgtatgaagttctgatatttcatctcctcctcgaagcttcttgtcagaaaagactacaattttctttcgcgaaaaagcctcaagaacatggcta |
218 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7035399 |
aattgctgtatgaagttctgatatttcgtctcctcctcgaagcttcttgtcagaaaagactacaattttctttcgcgaaaaagcctcaagaacatggcta |
7035300 |
T |
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| Q |
219 |
aggaaatttttgcgaatatcactacccct |
247 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
7035299 |
aggaaatttttgcgaatatcactacccct |
7035271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 7028797 - 7028572
Alignment:
| Q |
19 |
aatttgctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
7028797 |
aatttgctctgcactcgactattttcacaagctcgtccaaacaccaatgtgaagatgcaaagtttggagaaaatatgaccaatgaaatcaatgatttttc |
7028698 |
T |
|
| Q |
119 |
aattgctgtatgaagttctgatatttcatctcctcctcgaagcttcttgtcagaaaagactacaattttctttcgcgaaaaagcctcaagaacatggcta |
218 |
Q |
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||||||| | |||| | |||||| ||| |||||| | ||||| ||||||||||| || | ||| ||||||||| ||||| || || ||||||||| |
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| T |
7028697 |
aattgctctttgaattgctgataattcgtctcctgttattagctttttgtcagaaaaaacaatgattccctttcgcgacaaagcgtcgaggacatggcta |
7028598 |
T |
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| Q |
219 |
aggaaatttttgcgaatatcactacc |
244 |
Q |
| |
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||||||||||||||||| |||||||| |
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| T |
7028597 |
aggaaatttttgcgaatgtcactacc |
7028572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 7078437 - 7078653
Alignment:
| Q |
25 |
ctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttcaattgc |
124 |
Q |
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|||| ||||| ||||||||||||||||| |||| |||||||| |||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |
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| T |
7078437 |
ctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaatgaaatgaatgatttttcaattgc |
7078536 |
T |
|
| Q |
125 |
tgtatgaagttctgatatttcatctcctcctcgaagcttcttgtcagaaaagactacaattttctttcgcgaaaaagcctcaagaacatggctaaggaaa |
224 |
Q |
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| | |||| | |||||| |||||||||| | |||||| ||||||||||| || || ||| |||||||||| ||||| || || |||||||||||||| |
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| T |
7078537 |
tctttgaattgctgataattcatctcctgttttaagctttttgtcagaaaaaacaacgattctctttcgcgacaaagcttcgaggacatggctaaggaag |
7078636 |
T |
|
| Q |
225 |
tttttgcgaatatcact |
241 |
Q |
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| ||||||||| ||||| |
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| T |
7078637 |
tgtttgcgaatgtcact |
7078653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 7021192 - 7020978
Alignment:
| Q |
21 |
tttgctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttcaa |
120 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||| ||| ||||||||| || ||||||||||| ||||||||||||||||| |
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| T |
7021192 |
tttgctctgcaatcaactattttcacaagctcatccaaacaccaatgtgaatatgaaaagtttggagagaatatgaccaaatgaatgaatgatttttcaa |
7021093 |
T |
|
| Q |
121 |
ttgctgtatgaagtt---ctgatatttcatctcctcctcgaagcttcttgtcagaaaagactacaattttctttcgcgaaaaagcctcaagaacatggct |
217 |
Q |
| |
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||||| || ||||| |||||||||||||||| || ||| |||||||||||||| || |||| |||||||||||||||| |||| |||||||| |
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| T |
7021092 |
ttgcttcattaagttttggtgatatttcatctccttcttcaagtttcttgtcagaaaatacatttatttgctttcgcgaaaaagccacaaggacatggct |
7020993 |
T |
|
| Q |
218 |
aaggaaatttttgcg |
232 |
Q |
| |
|
|||||||||| |||| |
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| T |
7020992 |
aaggaaatttctgcg |
7020978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 7086979 - 7087060
Alignment:
| Q |
25 |
ctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaat |
106 |
Q |
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|||| ||||| || ||||| |||||||||||||||||||| | |||||| ||| ||||| | || |||||||| |||||||| |
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| T |
7086979 |
ctctacactcaacaattttgacaagctcatccaaacaccattttgaagaagcatagttttgagagaatatgactaatgaaat |
7087060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 7069936 - 7070013
Alignment:
| Q |
48 |
agctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttcaattgct |
125 |
Q |
| |
|
|||||||||||||||||| |||||| ||| ||||| | || |||||||| |||||||| | ||| ||||||||||| |
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| T |
7069936 |
agctcatccaaacaccaagatgaagaagcatagttttgagagaatatgactaatgaaattgaagatgtttcaattgct |
7070013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 3821534 - 3821613
Alignment:
| Q |
28 |
tgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatg |
107 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||| ||| ||||| ||| |||||||||||||||||| |
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| T |
3821534 |
tgcactcgattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttttgagaatatgaccaatgaaatg |
3821613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 4003270 - 4003367
Alignment:
| Q |
28 |
tgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttcaattgct |
125 |
Q |
| |
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||||||| | |||||||||||| || || ||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||||| |||||||||| |
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| T |
4003270 |
tgcactcaattattttcacaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaatgaatgatccttcaattgct |
4003367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 3811961 - 3812040
Alignment:
| Q |
28 |
tgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatg |
107 |
Q |
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||||||| | |||||||||||||||||| ||||||||||||||||| ||| ||||| ||| |||||||||||||||||| |
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| T |
3811961 |
tgcactcaattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaatg |
3812040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 3953138 - 3953038
Alignment:
| Q |
25 |
ctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttcaattgc |
124 |
Q |
| |
|
|||||||||| | |||||||||||| || || ||||||||| ||||||| ||| ||||| ||| ||||||| |||||||||||| ||| ||||||||| |
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| T |
3953138 |
ctctgcactcaattattttcacaagttcttctaaacaccaacgtgaagaagcatagttttctgagaatatgatcaatgaaatgaacgatccttcaattgc |
3953039 |
T |
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| Q |
125 |
t |
125 |
Q |
| |
|
| |
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|
| T |
3953038 |
t |
3953038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 4220769 - 4220869
Alignment:
| Q |
25 |
ctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttcaattgc |
124 |
Q |
| |
|
|||||||||| | |||||| ||||| || || ||||||||||||||||| ||| ||||| || |||||||||||||||||| ||||| ||||||||| |
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| T |
4220769 |
ctctgcactcaattatttttacaagttcttctaaacaccaatgtgaagaagcatagttttcagagaatatgaccaatgaaatggatgatccttcaattgc |
4220868 |
T |
|
| Q |
125 |
t |
125 |
Q |
| |
|
| |
|
|
| T |
4220869 |
t |
4220869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 3988159 - 3988237
Alignment:
| Q |
28 |
tgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaat |
106 |
Q |
| |
|
||||||||| |||||||||||| ||||| ||||||||||||||||| | | | ||| ||| ||||||||||||||||| |
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|
| T |
3988159 |
tgcactcgattattttcacaagttcatctaaacaccaatgtgaagaagaataattttttgagaatatgaccaatgaaat |
3988237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 3916091 - 3916008
Alignment:
| Q |
30 |
cactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgat |
113 |
Q |
| |
|
||||| |||||||||||||| || | ||||||||||||||| | ||| ||||| ||| ||||||| |||||||||||||||| |
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| T |
3916091 |
cactcaactattttcacaagttcttttaaacaccaatgtgaacaagcatagttttctgagaatatgatcaatgaaatgaatgat |
3916008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 4011749 - 4011828
Alignment:
| Q |
28 |
tgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatg |
107 |
Q |
| |
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||||||| | ||||||| |||| || || ||||||||||||||| | ||| ||||| ||| |||||||||||||||||| |
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| T |
4011749 |
tgcactcaattattttcgcaagttcttctaaacaccaatgtgaacaagcatagttttatgagaatatgaccaatgaaatg |
4011828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 13399111 - 13399196
Alignment:
| Q |
28 |
tgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgat |
113 |
Q |
| |
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||||||| | |||||||||||| || || ||||||||| ||||||| ||| ||||| ||| ||||||| ||||||||| |||||| |
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| T |
13399111 |
tgcactcaattattttcacaagttcttctaaacaccaacgtgaagaagcatagttttctgagaatatgatcaatgaaataaatgat |
13399196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 19738 - 19791
Alignment:
| Q |
30 |
cactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagttt |
83 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| | ||||| |||| ||||| |
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|
| T |
19738 |
cactcgactattttcacaacttcatccaaacaccattttgaagttgcatagttt |
19791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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