View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18300_high_2 (Length: 661)
Name: NF18300_high_2
Description: NF18300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18300_high_2 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 213 - 554
Target Start/End: Complemental strand, 29166007 - 29165669
Alignment:
| Q |
213 |
attaccctgtataccatatt-acatgatactgtacaaccatagctaccataattacattatttttaacaagctccatcactttagagcatataaatcata |
311 |
Q |
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| T |
29166007 |
attaccctatatactatatttacatgatgctgtacaaccatagctaccataattacattatttttaacaagctc-atcactttagagcatataaatcata |
29165909 |
T |
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| Q |
312 |
tgcatcaatcttgttacttgtattgcttatacaaggacctctcaaaggcttagtgaaaacatctacaaattgatcatttgaaccaacaaagttagtaatg |
411 |
Q |
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| T |
29165908 |
tgcatcaagcttgttacttgtattgcttatacaaggacctctcaaaggcttagtg-aaacatctagaaattgatcatttgaaccaacgaagttagtgatg |
29165810 |
T |
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| Q |
412 |
atgtctctgaaaaatattttcttgaattaaattacggtatctcataatataattggttctctcacaaaatactgaatttgaggttatattcaaatgccgt |
511 |
Q |
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| T |
29165809 |
atgtctctg-aaaatattttcttgaatgaaattacagtatctcaaagtatagttggttctctcacaaaatactgaatttgaggatatattcaaa-gtcgt |
29165712 |
T |
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| Q |
512 |
ggttgtcaccgcacttattgctatcattgtagccatattgaag |
554 |
Q |
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| T |
29165711 |
ggttgtcaccgcacttattgctatcattattgccatattgaag |
29165669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 29167846 - 29167725
Alignment:
| Q |
58 |
ttttcatattgattttgtcttgcgtttcattcatgaaatgcttgcatataaagcatctcaatataaccggaacaagcgtattcagcatttgcctgataac |
157 |
Q |
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| T |
29167846 |
ttttcatattcattct-tcttgcttttcattcattaagtgcttgcatatatagcatctcaatataaccggaaccagggtattcaacatttgcctgataac |
29167748 |
T |
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| Q |
158 |
aatgctaaatgaattgtaaaaca |
180 |
Q |
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| T |
29167747 |
aatgctaaaggaattgtaaaaca |
29167725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 29169803 - 29169661
Alignment:
| Q |
14 |
tgcaaaggaaagaaatagtaacatgctaagggaaccctaagcccttttcatattgattttgtcttgcgtttcattcatgaaatgcttgcatataaagcat |
113 |
Q |
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| T |
29169803 |
tgcaaaggaaagaaatagtaacttggtaagggaaaactaagcc-ttttcatattgattttgtcttgcttttcattcatcaagtgcttgcgtatatagtat |
29169705 |
T |
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| Q |
114 |
ctcaatataaccggaacaagcgtattcagcatttgcctgataacaatgctaaa |
166 |
Q |
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| T |
29169704 |
ctcaatat---------aagcgtattcagcatttgcctgataacaatgctaaa |
29169661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 56537 - 56490
Alignment:
| Q |
360 |
cttagtgaaaacatctacaaattgatcatttgaaccaacaaagttagt |
407 |
Q |
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| T |
56537 |
cttagtgaaaacatctgtcaattgatcatttgaaccaacaaagctagt |
56490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 994621 - 994658
Alignment:
| Q |
381 |
ttgatcatttgaaccaacaaagttagtaatgatgtctc |
418 |
Q |
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| T |
994621 |
ttgatcatttgaactaacaaagctagtaatgatgtctc |
994658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 49931859 - 49931818
Alignment:
| Q |
348 |
acctctcaaaggcttagtgaaaacatctacaaattgatcatt |
389 |
Q |
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| T |
49931859 |
acctctcaaaggtttagtgaagacatctaccaattgatcatt |
49931818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 18071950 - 18071982
Alignment:
| Q |
296 |
gagcatataaatcatatgcatcaatcttgttac |
328 |
Q |
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| T |
18071950 |
gagcatataaatcatatgcatcaagcttgttac |
18071982 |
T |
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