View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18300_high_3 (Length: 558)
Name: NF18300_high_3
Description: NF18300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18300_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 17 - 556
Target Start/End: Original strand, 38090917 - 38091456
Alignment:
| Q |
17 |
ggaacaaggtggtggtgatattgttcatcaatggcaatatgttgctgataagatacatgatgggttgtttattagagttgttgttagtcctgcgaagaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38090917 |
ggaacaaggtggtggtgatattgttcatcaatggcaatatgttgctgataagatacatgatgggttgtttattagagttgttgttagtcctgcgaagaga |
38091016 |
T |
|
| Q |
117 |
aaggggaagaagacaattaaaactaagttgaatgctttgtttcttggtaatgcatatgagttgcttgatgtaatgaatgagagttttcctgaattgggct |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38091017 |
aaggggaagaagacaattaaggctaagtttaatgctttgtttcttggtaatgcatatgagttgcttgatgtgatgaatgagagttttcctgaattgggct |
38091116 |
T |
|
| Q |
217 |
tgattggtgaacaatgtattgaaatgagttggattgattcagtgttgttttggtataactatccggtagggactttgactgatattttacttgaaagaca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38091117 |
tgattggtgaacaatgtattgaaatgagttggattgattcagtgttgttttggtataactatccggtagggactttgactgatattttacttgaaagaca |
38091216 |
T |
|
| Q |
317 |
ttcatcaaaagagaaattcttgaagaggaaatcagattatgtgcagaagccgatttcgaaaattgggtttgatggtatatggaagaagatgattgaacta |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38091217 |
ttcatcaaaagagaaattcttgaagaggaaatcagattatgtgcagaagccgatttcaaaaattgggtttgatggtatatggaagaagatgattgaacta |
38091316 |
T |
|
| Q |
417 |
ggaaaggtttcactcacattcaatccttatggtgggaaaatgagtgagatttctgagatggcaacaccattcccacatagagcaggtaacatatataaaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38091317 |
ggaaaggtttcactcacattcaatccttatggtgggaaaatgggtgagatttctgagatggcaacaccattcccacatagagcaggtaacatatataaaa |
38091416 |
T |
|
| Q |
517 |
ttcagtattcagttaactggaaagaagaaagtgatgatgt |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38091417 |
ttcagtattcagttaactggaaagaagaaagtaatgatgt |
38091456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University