View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18300_high_4 (Length: 493)

Name: NF18300_high_4
Description: NF18300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18300_high_4
NF18300_high_4
[»] chr2 (4 HSPs)
chr2 (20-481)||(40059725-40060195)
chr2 (58-345)||(40077841-40078129)
chr2 (20-481)||(40085612-40086083)
chr2 (399-462)||(40078205-40078268)
[»] chr7 (1 HSPs)
chr7 (77-184)||(35052652-35052758)
[»] chr5 (2 HSPs)
chr5 (58-175)||(12735460-12735579)
chr5 (58-175)||(12798287-12798406)
[»] chr4 (2 HSPs)
chr4 (270-345)||(22015579-22015654)
chr4 (101-178)||(22015667-22015744)
[»] chr3 (1 HSPs)
chr3 (58-184)||(53322735-53322862)


Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 20 - 481
Target Start/End: Original strand, 40059725 - 40060195
Alignment:
Q  20 gaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcatctaatcgagggctttaacttcttaacagtggtttccctcttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059725 gaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcatctaatcgagggctttaacttcttaacagtggtttccctcttt 40059824  T
Q  120 ggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaatc 219  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059825 ggcttcacttcattccggggattaagttccgaactgataatgaaccatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaatc 40059924  T
Q  220 tgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcaca 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059925 tgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcaca 40060024  T
Q  320 aggaggacctataattttatctcaggnnnnnnnatcactaaatacaagtattgcgagtatatttttgtaga-----------taaagtttatatttgtta 408  Q
    ||||||||||||||||||||||||||       |||||||||||||| ||| |||||||||||||||||||            |||||| ||||||||||    
T  40060025 aggaggacctataattttatctcaggtttttttatcactaaatacaattatagcgagtatatttttgtagacatattaaggtcaaagttaatatttgtta 40060124  T
Q  409 atgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagacatcgattcagcctatgcttct 481  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40060125 atgtgagagtatttgtgc--tctattgccagattgaaaatgagtatggagacatcgattcagcctatggttct 40060195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 58 - 345
Target Start/End: Original strand, 40077841 - 40078129
Alignment:
Q  58 tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg 155  Q
    |||||||||| |||||||||  ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40077841 tatttttctgtggtgttcatgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactg 40077940  T
Q  156 ataatgaaccatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccg 255  Q
    | ||||||||||||||||||| | ||||| | || |||||||||| | | |||||||||||||||||||||||||| || |||| |||||||||||||||    
T  40077941 acaatgaaccatttaaggtag-gctaaccttcaccctgttgcttcatgcatttgtccttaaatctgagttcacttgacaggaaactttgtcttcaggccg 40078039  T
Q  256 aaatgaagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg 345  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40078040 aaatgaagcgattcaccgctaagattgtcgatctcatgaagcaagagaaactgtatgcatcacaaggaggacctataattttatctcagg 40078129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 481
Target Start/End: Original strand, 40085612 - 40086083
Alignment:
Q  20 gaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctct 117  Q
    |||||||||||||||||||||    |||||||||||  ||| ||||  ||||||||||  ||||| ||||||||||||||||| ||||||||||||||||    
T  40085612 gaactatgggtaaagtttggt----aatttatgtgtattatatttcgagggtgttcatgtctaattgagggctttaacttcttgacagtggtttccctct 40085707  T
Q  118 ttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaa 217  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || ||||| | | ||   |||||| | |||||||||||  |    
T  40085708 ttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggta-agttaaccttcagtccagtgcttcatgcttttgtccttgga 40085806  T
Q  218 tctgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatca 317  Q
     ||||||||||||| || |||| ||||||||||||  ||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||||    
T  40085807 -ctgagttcacttgacaggaaactttgtcttcaggttgaaatgaagcgattcaccactaagattgtcgacctcatgaagcaagagaaactgtatgcatca 40085905  T
Q  318 caaggaggacctataattttatctcaggnnnnnnnatcacta-----aatacaagtattgcgagtatatttttgtagat---------aaagtttatatt 403  Q
    ||||||||||||||||||||||||||||       ||||  |     ||||||||||| |  | |||||| ||| ||||         ||||||||||||    
T  40085906 caaggaggacctataattttatctcaggtttttttatcatgaaatacaatacaagtatagttaatatattcttgaagatattaaggtcaaagtttatatt 40086005  T
Q  404 tgttaatgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagacatcgattcagcctatgcttct 481  Q
    ||||||||||||||| |||||| |||||| || ||||| |||||||||||||||||||||||||||||||||| ||||    
T  40086006 tgttaatgtgagagtgtttgtgatttctaatgacagatagaaaatgagtatggagacatcgattcagcctatggttct 40086083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 399 - 462
Target Start/End: Original strand, 40078205 - 40078268
Alignment:
Q  399 atatttgttaatgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagacat 462  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  40078205 atatttgttaatgtgagagtatttgtgctttctaatgccagattgaaaatgagtatggaaacat 40078268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 35052758 - 35052652
Alignment:
Q  77 tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag 176  Q
    |||||| |||||||||||||||||||||||||||  ||||||||| ||||||||||||| ||||||| ||||| ||| || ||||||||||||||||||     
T  35052758 tctaattgagggctttaacttcttaacagtggttaacctctttggattcacttcattccagggattaggttccaaacagacaatgaaccatttaaggta- 35052660  T
Q  177 aggtaacc 184  Q
    ||||||||    
T  35052659 aggtaacc 35052652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 12735579 - 12735460
Alignment:
Q  58 tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg 155  Q
    |||||| ||||||| |||||  ||||| ||||||||||||||||||| |||||||  ||||||||| ||||||||||||| ||||||||||||| ||  |    
T  12735579 tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag 12735480  T
Q  156 ataatgaaccatttaaggta 175  Q
    | ||||||||||||||||||    
T  12735479 acaatgaaccatttaaggta 12735460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 12798406 - 12798287
Alignment:
Q  58 tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg 155  Q
    |||||| ||||||| |||||  ||||| ||||||||||||||||||| |||||||  ||||||||| ||||||||||||| ||||||||||||| ||  |    
T  12798406 tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag 12798307  T
Q  156 ataatgaaccatttaaggta 175  Q
    | ||||||||||||||||||    
T  12798306 acaatgaaccatttaaggta 12798287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 22015654 - 22015579
Alignment:
Q  270 accgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg 345  Q
    |||||||||||||||||| | |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  22015654 accgctaagattgtcgatatgatgaagcaagagaacctctatgcatcacaaggaggacctataattttatctcagg 22015579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 22015744 - 22015667
Alignment:
Q  101 aacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagag 178  Q
    |||||||||||||| |||||| | || || ||| | || ||||||||||||||| ||||||||||||| |||| ||||    
T  22015744 aacagtggtttccccctttggttgcattttattgctggaattaagttccgaactaataatgaaccattcaaggcagag 22015667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 184
Target Start/End: Original strand, 53322735 - 53322862
Alignment:
Q  58 tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg 155  Q
    |||||||||||||| |||||  ||||| ||||||||||||||||||| | |||||  ||||||||  ||||||||||||| ||||||||||||| ||  |    
T  53322735 tatttttctggggtcttcatttctaattgagggctttaacttcttaagattggttaacctctttgtattcacttcattccagggattaagttccaaatcg 53322834  T
Q  156 ataatgaaccatttaaggtagaggtaacc 184  Q
    | |||||||||||||||||| ||||||||    
T  53322835 acaatgaaccatttaaggta-aggtaacc 53322862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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