View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18300_high_9 (Length: 293)
Name: NF18300_high_9
Description: NF18300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18300_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 49406146 - 49406417
Alignment:
| Q |
1 |
acagaagccattggaacccataatccatcaagaaaattatgcaaaaacaccccgtgatcacggtatgagaatgctagtatataagagccgctgcattgca |
100 |
Q |
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| T |
49406146 |
acagaagccattggaacccataatccgtcaagaacattatgcaaaaacaccccgtggccacggtatgagaatgcttgtatatgagagccgctgcattgca |
49406245 |
T |
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| Q |
101 |
aatcacataacgcctttgtgagcgctgagcaggaacttaaacctctttaaccattttccccaaatgtgcaaagatgtgtgatatatctcagtcaaaagta |
200 |
Q |
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| T |
49406246 |
aatcacataacgcctttgtgagcgctgagcaggaacttaaacctctttaaccatttcccccaaatgtgcaaagatgtgtgatatatc----tcaaaagta |
49406341 |
T |
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| Q |
201 |
tcttactctgtttgatattcaattgcatagatttaaataataattttagattcatgatgaaccaagtactggtgtg |
276 |
Q |
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| T |
49406342 |
tcttactctgtttgatattcaattgcatagatttaaataataattttagattcatgatgaaccaagtactggtgtg |
49406417 |
T |
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Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 52270311 - 52270072
Alignment:
| Q |
6 |
agccattggaacccataatccatcaagaaaattatgcaaaaacaccccgtgatcacggtatgagaatgctagtatataagagccgctgcattgcaaatca |
105 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||| |||| || ||||||||||| ||||||||| | ||| |||||||||| |
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| T |
52270311 |
agccattggaacccataatccatcctgaacattatgcaaaaacaccacgtggccatggtatgagaattctagtatat-----ctgctatgttgcaaatca |
52270217 |
T |
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| Q |
106 |
cataacgcctttgtgagcgctgagcaggaacttaaacctctttaaccattttccccaaatgtgcaaagatgtgtgatatatctcagtc-aaaagtatctt |
204 |
Q |
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| T |
52270216 |
cataacgcctttgtgagcactgagcaggaacttaaacctctttagccattttccccaaatg-----------gtcatatttctcaaactcaaagtatctt |
52270128 |
T |
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| Q |
205 |
actctgtttgatattcaattgcatagatttaaataataattttagattcatgatga |
260 |
Q |
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|||||| ||| ||||||||| || | |||||||||||||||||||||||||||||| |
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| T |
52270127 |
actctgcttggtattcaattacacaaatttaaataataattttagattcatgatga |
52270072 |
T |
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