View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18300_low_12 (Length: 255)
Name: NF18300_low_12
Description: NF18300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18300_low_12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 34694980 - 34694742
Alignment:
| Q |
17 |
aaagattgactcatatttggaaaaccagagaagtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccg |
116 |
Q |
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| T |
34694980 |
aaagattgactcatatttggaaaaccagagaagtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccg |
34694881 |
T |
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| Q |
117 |
ggaaagaggaaaatgggggtgtaggtagttgtagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtga |
216 |
Q |
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| T |
34694880 |
ggaaagaggaaaatgggggtgtaggtagttgtagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtga |
34694781 |
T |
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| Q |
217 |
attaggcaccatcacggtcccatcattaatattggagat |
255 |
Q |
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| T |
34694780 |
attaggcaccatcaccatcccatcattaatattggagat |
34694742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 27 - 255
Target Start/End: Complemental strand, 34687044 - 34686816
Alignment:
| Q |
27 |
tcatatttggaaaaccagagaagtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagagga |
126 |
Q |
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| T |
34687044 |
tcatattcgggaaatcagagaagtaattagacccctctagtgttgtcatgtcattaagcactaccctttcattaatatgattctcaaccgggaaagaggg |
34686945 |
T |
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| Q |
127 |
aaatgggggtgtaggtagttgtagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcacc |
226 |
Q |
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| T |
34686944 |
aaatgggggtgtaggtagttgtagaccggtttcagcgagggtgtcaggataagtatcatcttggttttggttcagagagattgcaggtgaattaggcacc |
34686845 |
T |
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| Q |
227 |
atcacggtcccatcattaatattggagat |
255 |
Q |
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| T |
34686844 |
atcaccgtcccatcattaatattggagat |
34686816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 254
Target Start/End: Complemental strand, 8284906 - 8284693
Alignment:
| Q |
38 |
aaaccagagaagtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtg |
137 |
Q |
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| T |
8284906 |
aaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactac---ttcattaatatgattctgcacagggaaagagaaaaatgggggtg |
8284810 |
T |
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| Q |
138 |
taggtagttgtagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcaccatcacggtccc |
237 |
Q |
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| T |
8284809 |
taggtagttgtaaatcggttccagtaggggtttgaaaataagcatcaacttggttttggttcaccgagactgcgggtgaattagaaaacaccaccatccc |
8284710 |
T |
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| Q |
238 |
atcattaatattggaga |
254 |
Q |
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| T |
8284709 |
atcattagcattggaga |
8284693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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