View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18300_low_13 (Length: 243)
Name: NF18300_low_13
Description: NF18300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18300_low_13 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 40060400 - 40060167
Alignment:
| Q |
10 |
agatgaatgcagacaacatactaagatttctcttttccagaagacaggcaacctagtaaaccaaaaaacaattagcgtagacatatcaaaacataaaacc |
109 |
Q |
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| T |
40060400 |
agatgaatgcagacaacatactaagatttctcttttccagaagacaggcaacctagtaaaccagaaaacaattagcgtagacatatcaaaacataaaacc |
40060301 |
T |
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| Q |
110 |
tacgattggattaggagcatcttcttgctgacacatgacccaaggtacacctgtatcaagagatgtagccatttttgctgcccaattgatgtatgattta |
209 |
Q |
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| T |
40060300 |
tacgattgaatcaggagcatcttcttgctgacacatgacccaaggtacacctgtatcaagagatgtagccatttttgctgcccaattgatgtatgattta |
40060201 |
T |
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| Q |
210 |
ccagcagaaccataggctgaatcgatgtctccat |
243 |
Q |
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| T |
40060200 |
ccagcagaaccataggctgaatcgatgtctccat |
40060167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 40086300 - 40086055
Alignment:
| Q |
5 |
gagtgagatgaatgcagacaacatactaagatttctcttttccagaagacaggcaacctagtaaacca-------aaaaacaattagcgtagacatatca |
97 |
Q |
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| T |
40086300 |
gagtaagatgaatgcaaacggcataccaagattgctcttttccggaagacaggcaacctagtaaaccataaactaaaaaacaattaacattgacatatca |
40086201 |
T |
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| Q |
98 |
aaacataaaacctacgattggattaggagcatcttcttgctgacacatgacccaaggtacacctgtatcaagagatgtagccatttttgctgcccaattg |
197 |
Q |
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| T |
40086200 |
aaacataaaacttacaattggatcaggagcatctgcttgctgacacatgacccaaggtacacctgtatcaagagatgtagccatttttgctgcccaattg |
40086101 |
T |
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| Q |
198 |
atgtatgatttaccagcagaaccataggctgaatcgatgtctccat |
243 |
Q |
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| T |
40086100 |
atgtatgatttaccagcagaaccataggctgaatcgatgtctccat |
40086055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 40078411 - 40078278
Alignment:
| Q |
91 |
catatcaaaacataaaacctacgattggattaggagcatcttcttgctgacacatgacccaaggtacacctgtatcaagagatgtagccatttttgctgc |
190 |
Q |
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| T |
40078411 |
catattaaaacataaaacttacgattggatcaggagcatctccttgctgacacatgacccaaggaacacctgtatcaagagatgtagccatttttgcagc |
40078312 |
T |
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| Q |
191 |
ccaattgatgtatgatttaccagcagaaccatag |
224 |
Q |
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| T |
40078311 |
ccagttgatgtatgatttaccagcagaaccatag |
40078278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 22015335 - 22015415
Alignment:
| Q |
135 |
tgctgacacatgacccaaggtacacctgtatcaagagatgtagccatttttgctgcccaattgatgtatgatttaccagca |
215 |
Q |
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| T |
22015335 |
tgctggcacataatccagggaacacctgtatcaagagatgtagccattgatgctgcccaatcgatgtaggatttagcagca |
22015415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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