View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18300_low_14 (Length: 236)
Name: NF18300_low_14
Description: NF18300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18300_low_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 33747660 - 33747458
Alignment:
| Q |
15 |
agtgaatgaaatcaatattttcacattacaatgatgatgatggctaattcatttcaagatccataatacattttaagatcaatgttttcattgaaattca |
114 |
Q |
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| T |
33747660 |
agtgaatgaaatcaatattttcacattacaatgatgatgatggctaat-------------------acattttaagatcaatgttttcattgaaattca |
33747580 |
T |
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| Q |
115 |
atttcaagaaggcatacaactcgattagtcggagatatttgggttgtactcctagatatctacttgatgtacggttgtagagcttaggaggaagaagtta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33747579 |
atttcaagaaggcatacaactcgattagtcggagatatttgggttgtactcctagatatctacttgatgtacggttgtagagtttaggaggaagaagtta |
33747480 |
T |
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| Q |
215 |
ctattgtggaaaggtatactac |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
33747479 |
ctattgtggaaaggtatactac |
33747458 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 27220169 - 27220197
Alignment:
| Q |
17 |
tgaatgaaatcaatattttcacattacaa |
45 |
Q |
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| T |
27220169 |
tgaatgaaatcaatattttcacattacaa |
27220197 |
T |
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