View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18300_low_15 (Length: 227)
Name: NF18300_low_15
Description: NF18300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18300_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 49406124 - 49405905
Alignment:
| Q |
1 |
tttgtatttttagttgtttaattgcatgttaacggtatcacaacagaattggtgttgagggaggttggttagtgtctttttaacaaatacaggcgatgtg |
100 |
Q |
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| T |
49406124 |
tttgtatttttagttgtttaattgcatgttaacggtatcacaacagaattggtgttgagggaggttggttagtgtctttttaacaaatagaggcggtgtg |
49406025 |
T |
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| Q |
101 |
tgttatatttcaacaaaccttaagggaggttaatacaattttcccttttatatttaaacagctatttttaatcaaattatatatgccttatactcaatcc |
200 |
Q |
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| T |
49406024 |
tgttatatttcaacaaaccttaagggaggttaatacaattttcccttttatatttaaacaactatttttaatcaaattatatatgccttatactcaatcc |
49405925 |
T |
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| Q |
201 |
ccaactgtgaattcatctca |
220 |
Q |
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|||||||||||||| ||||| |
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| T |
49405924 |
ccaactgtgaattcttctca |
49405905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 52270339 - 52270485
Alignment:
| Q |
1 |
tttgtatttttagttgtttaattgcatgttaacggtatcacaacagaattggtgttgagggaggttggttagtgtctttttaacaaatacaggcgatgtg |
100 |
Q |
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| T |
52270339 |
tttgtatttttagttgtttagtttcatgttaacggtgttataacataattggtgttgaggggag---gttagtgcccttttaacaaatagagggggtgtg |
52270435 |
T |
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| Q |
101 |
tgttata--------tttcaacaaaccttaagggaggttaatacaatttt |
142 |
Q |
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| T |
52270436 |
tgttacatttcaagttttcaacaaaccttaagggaggttaatataatttt |
52270485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 52269787 - 52269742
Alignment:
| Q |
101 |
tgttatatttcaacaaaccttaagggaggttaatacaattttccct |
146 |
Q |
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||||| |||||||||||||||||||||||| |||| |||||||||| |
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| T |
52269787 |
tgttacatttcaacaaaccttaagggaggtcaatataattttccct |
52269742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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