View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18300_low_16 (Length: 210)
Name: NF18300_low_16
Description: NF18300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18300_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 28 - 192
Target Start/End: Original strand, 34686690 - 34686854
Alignment:
| Q |
28 |
gcaccctaccccaagaaatcaaaaagacaaccaattgcagatccagcttctaataactctctcccacaaatcaacacaccaccacccaactcatcttcat |
127 |
Q |
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| T |
34686690 |
gcaccctaccccaagaaatcaaaaagacaaccaattgcagatccagctcttaataactctctcccacaaatcaccacaccaccacccaactcatcttcat |
34686789 |
T |
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| Q |
128 |
catcttcctctaacaatattattggaatctccaatattaatgatgggacggtgatggtgcctaat |
192 |
Q |
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| T |
34686790 |
catcttcctctaacaatattattggaatctccaatattaatgatgggacggtgatggtgcctaat |
34686854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 34694659 - 34694780
Alignment:
| Q |
71 |
cagcttctaataactctctcccacaaatcaacacaccaccacccaactcatcttcatcatcttcctctaacaatattattggaatctccaatattaatga |
170 |
Q |
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| T |
34694659 |
cagcttcaaatagctctctcccacaaatcaacacaccaccacccaactcatcttcatcatcttcctctaacaatattattggaatctccaatattaatga |
34694758 |
T |
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| Q |
171 |
tgggacggtgatggtgcctaat |
192 |
Q |
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||||| |||||||||||||||| |
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| T |
34694759 |
tgggatggtgatggtgcctaat |
34694780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 34682493 - 34682533
Alignment:
| Q |
81 |
taactctctcccacaaatcaacacaccaccacccaactcat |
121 |
Q |
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| T |
34682493 |
taactctcttccacaaatcctcacaccaccacccaactcat |
34682533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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