View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18300_low_5 (Length: 457)
Name: NF18300_low_5
Description: NF18300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18300_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 46644565 - 46644139
Alignment:
| Q |
18 |
cagatcatattgccaatttttgtattctgatatcctgagttcatcgatagtttttaatgtgaaaacatttgagatctaatattt-gttagataattaata |
116 |
Q |
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| T |
46644565 |
cagatcatattgccaatttttgtattctgatatcctgagttcatcgatagttgttaatgtgaaaacatttgagatctaatattttgttagataattaata |
46644466 |
T |
|
| Q |
117 |
ggcaaagggttgtaaagttagaaagaaaacatggtatcagttccttggcatagttggatactcatagttttgaaatctgag-tgcttcattaagtatgaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46644465 |
ggcaaagggttgtaaagttagaaagaaaacatggtatcagttccttggcatagttggatactcatagttttgaaatctgagttgcttcattaagtatgaa |
46644366 |
T |
|
| Q |
216 |
taagtagtgagtaatactgtatattattacttttatgcttggttacaacttacaactcaagcttgaagtatgttcttgatgatgttatctaatctaaatt |
315 |
Q |
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| T |
46644365 |
taagtagtgagtaatactgtttattattacttttatgcttgg-------ttacaactcaagcttgaagtatgttcttgatgatgttatctaatctacatt |
46644273 |
T |
|
| Q |
316 |
tcctttataacatttcttcttaagccatcatttgagtgtttagttatctggtttgttttcctatttttcttggcagatggtgtcctttgagcagaatgat |
415 |
Q |
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| T |
46644272 |
tcctttataacatttcttcttaagccatcatttgagtgtttagttatctggtttgttttcctatttttcttggcagatggtgtcctttgagcagaatgat |
46644173 |
T |
|
| Q |
416 |
tttgatactttcattgaacatgcatctgatgatg |
449 |
Q |
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| T |
46644172 |
tttgatactttcattgaacatgcatctgatgatg |
46644139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 281 - 429
Target Start/End: Original strand, 46636029 - 46636178
Alignment:
| Q |
281 |
aagtatgttcttgatgatgttatctaatctaaatttcctttataacatttcttcttaagccatcatttgagtgtttagttatctgg-tttgttttcctat |
379 |
Q |
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||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| ||| |||| |||||||| ||||||||||||| |
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| T |
46636029 |
aagtatgctcttgatgatgtaatctaatctacatttcctttataacatttcttcttaagccgcgattttagtctttaattatctggttttgttttcctat |
46636128 |
T |
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| Q |
380 |
ttttcttggcagatggtgtcctttgagcagaatgattttgatactttcat |
429 |
Q |
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||||||||||||||||||||||| | |||||| || ||||| |||||| |
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| T |
46636129 |
atttcttggcagatggtgtcctttaaccagaattataatgatattttcat |
46636178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 281 - 412
Target Start/End: Original strand, 46617332 - 46617463
Alignment:
| Q |
281 |
aagtatgttcttgatgatgttatctaatctaaatttcctttataacatttcttcttaagccatcatttgagtgtttagttatctgg-tttgttttcctat |
379 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |||||| | ||||||||||||| |||||||| |||| |
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| T |
46617332 |
aagtatgctcttgatgatgttatctaatctacatttcctttataa-atttcttcttaaggcatgatttgactctttagttatctggttttgttttactat |
46617430 |
T |
|
| Q |
380 |
ttttcttggcagatggtgtcctttgagcagaat |
412 |
Q |
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|||||| |||||||||||||||| | |||||| |
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| T |
46617431 |
atttctttgcagatggtgtcctttaaccagaat |
46617463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 429
Target Start/End: Original strand, 46628790 - 46628852
Alignment:
| Q |
367 |
tttgttttcctatttttcttggcagatggtgtcctttgagcagaatgattttgatactttcat |
429 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||| || ||||| |||||| |
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| T |
46628790 |
tttgttttcctatttttcttggcagatggtgttctttaagcagaattataatgatattttcat |
46628852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 46617192 - 46617220
Alignment:
| Q |
166 |
atagttggatactcatagttttgaaatct |
194 |
Q |
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| T |
46617192 |
atagttggatactcatagttttgaaatct |
46617220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 269 - 390
Target Start/End: Complemental strand, 18376390 - 18376269
Alignment:
| Q |
269 |
aactcaagcttgaagtatgttcttgatgatgttatctaatctaaatttcctttataacatttcttcttaagccatcatttgagtgtttagttatctgg-t |
367 |
Q |
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|||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||| |||||||| | |
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| T |
18376390 |
aactcatgcttgaagtatgctctagatgatgttatctaatctacatttcctttataa-atttcgtcttaagccatgatttgagtgtttaattatctggtt |
18376292 |
T |
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| Q |
368 |
ttgttttcctatttttcttggca |
390 |
Q |
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||||||||||||||||||||||| |
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| T |
18376291 |
ttgttttcctatttttcttggca |
18376269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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