View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18300_low_6 (Length: 436)
Name: NF18300_low_6
Description: NF18300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18300_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 137 - 431
Target Start/End: Original strand, 5277381 - 5277681
Alignment:
| Q |
137 |
ggtggcatttagcctgggaagataaagttttttcccttgatgggaaagtgatgtcttcaccattgatttattgattattttattcaatggttgggattta |
236 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5277381 |
ggtggcatttagcatgggaagataaagttttttcccttgatggaaaagtgatgtcttcaccattgatttattgattattttattcaatggttgggattta |
5277480 |
T |
|
| Q |
237 |
aaagaggctacctgcaactaacttattggaagtgtattgatagattcttttccgnnnnnnnnngacccaaccttattgcagaaaccaacagatcttctct |
336 |
Q |
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| ||||||||||||||||||||||||||||| || |||||||||||||||| || |||||||||||||||||||||||| ||| |||||||| |
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| T |
5277481 |
agagaggctacctgcaactaacttattggaactgcattgatagattctttttcggaaaaaaaagacccaaccttattgcagaaaccagcaggtcttctct |
5277580 |
T |
|
| Q |
337 |
ctcacccataatctttagtcaatgttcaa------caccaccaccgctaatggtgggtcttttcttcacttgctcttactcaagtatctcttgatgatgt |
430 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5277581 |
ctcacccataatttttagtcaatgttcaacaccaccaccaccaccgctaatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgt |
5277680 |
T |
|
| Q |
431 |
c |
431 |
Q |
| |
|
| |
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|
| T |
5277681 |
c |
5277681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 136 - 431
Target Start/End: Original strand, 40726923 - 40727224
Alignment:
| Q |
136 |
tggtggcatttagcctgggaagataaagttttttcccttgatgggaaagtgatgtcttcaccattgatttattgattattttattcaatggttgggattt |
235 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40726923 |
tggtggcatttagcttgggaagataaagttttttcccttgatgggaaagtgatgtcttcaccattgatttattgattattttattcaatggttgggattt |
40727022 |
T |
|
| Q |
236 |
aaaagaggctacctgcaactaacttattggaagtgtattgatagattcttttccgnnnnnnnnngacccaaccttattgcagaaaccaacagatcttctc |
335 |
Q |
| |
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|| ||||||||||||||||||||||||||||| || |||||||||||||||| | ||||||||||| |||||||||||| || ||||||| |
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| T |
40727023 |
aagagaggctacctgcaactaacttattggaactgcattgatagattcttttttggaaaaaaaagacccaaccttgttgcagaaaccagtaggtcttctc |
40727122 |
T |
|
| Q |
336 |
tctcacccataatctttagtcaatgttcaacaccacca------ccgctaatggtgggtcttttcttcacttgctcttactcaagtatctcttgatgatg |
429 |
Q |
| |
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||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40727123 |
tctcacccataatttctagtcaatgttcaacaccaccaccgccgccgctaatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatg |
40727222 |
T |
|
| Q |
430 |
tc |
431 |
Q |
| |
|
|| |
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|
| T |
40727223 |
tc |
40727224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 137 - 431
Target Start/End: Original strand, 53869606 - 53869906
Alignment:
| Q |
137 |
ggtggcatttagcctgggaagataaagttttttcccttgatgggaaagtgatgtcttcaccattgatttattgattattttattcaatggttgggattta |
236 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53869606 |
ggtggcatttagcatgggaagataaagttttttcccttgatggaaaagtgatgtcttcaccattgatttattgattattttattcaatggttgggattta |
53869705 |
T |
|
| Q |
237 |
aaagaggctacctgcaactaacttattggaagtgtattgatagattcttttccgnnnnnnnnngacccaaccttattgcagaaaccaacagatcttctct |
336 |
Q |
| |
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| ||||||||||||||||||||||||||||| || |||||||||||||||| || |||||||||||||||||||||||| ||| ||||||| |
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| T |
53869706 |
agagaggctacctgcaactaacttattggaactgcattgatagattctttttcggaaaaaaaagacccaaccttattgcagaaaccagcaggtcttctca |
53869805 |
T |
|
| Q |
337 |
ctcacccataatctttagtcaatgttcaa------caccaccaccgctaatggtgggtcttttcttcacttgctcttactcaagtatctcttgatgatgt |
430 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53869806 |
ctcacccataatttttagtcaatgttcaacaccaccaccaccaccgctaatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgt |
53869905 |
T |
|
| Q |
431 |
c |
431 |
Q |
| |
|
| |
|
|
| T |
53869906 |
c |
53869906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 137 - 431
Target Start/End: Complemental strand, 625544 - 625232
Alignment:
| Q |
137 |
ggtggcatttagcctgggaagataaagttttttcccttgatgggaaagtgatgtcttcaccattgatttattgattattttattcaatggttgggattta |
236 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
625544 |
ggtggcatttagcttgggaagataaagttttttcccttgatggaaaagtgatgtcttcaccattgatttattgattattttattcaatggttgggattta |
625445 |
T |
|
| Q |
237 |
aaagaggctacctgcaactaacttattggaagtgtattgatagattcttttccg------------nnnnnnnnngacccaaccttattgcagaaaccaa |
324 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| || ||||||||||||||||| | |||||| ||||||||||||||||| |
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|
| T |
625444 |
agagaggctgcctgcaactaacttattggaactgcattgatagattcttttctgaaaaaaaaaaaaaaaaaaaaagacccatccttattgcagaaaccag |
625345 |
T |
|
| Q |
325 |
cagatcttctctctcacccataatctttagtcaatgttcaa------caccaccaccgctaatggtgggtcttttcttcacttgctcttactcaagtatc |
418 |
Q |
| |
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||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
625344 |
cagttcttctctctcacccataatttttagtcaatgttcaacaccaccaccaccaccgctaatggtggctcttttcttcacttgctcttactcaagtatc |
625245 |
T |
|
| Q |
419 |
tcttgatgatgtc |
431 |
Q |
| |
|
|||||| |||||| |
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|
| T |
625244 |
tcttgaagatgtc |
625232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 366 - 414
Target Start/End: Original strand, 51975596 - 51975644
Alignment:
| Q |
366 |
caccaccaccgctaatggtgggtcttttcttcacttgctcttactcaag |
414 |
Q |
| |
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|||||||||| |||| ||||||||||||| |||||||||||| |||||| |
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|
| T |
51975596 |
caccaccacctctaacggtgggtcttttcctcacttgctcttgctcaag |
51975644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 51975347 - 51975448
Alignment:
| Q |
136 |
tggtggcatttagcctgggaagataaagttttttcccttgatgggaaa-gtgatgtcttcaccattgatttattgattattttattcaatggttgggatt |
234 |
Q |
| |
|
||||||||||||||||||||| | | |||||||| |||||||||| || | |||| |||||||||| |||||||||||||||| || || | ||||| |
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| T |
51975347 |
tggtggcatttagcctgggaaacttga-atttttcccatgatgggaaaggtaaggtctccaccattgatatattgattattttattaaacggctaggatt |
51975445 |
T |
|
| Q |
235 |
taa |
237 |
Q |
| |
|
||| |
|
|
| T |
51975446 |
taa |
51975448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 424
Target Start/End: Complemental strand, 41905652 - 41905560
Alignment:
| Q |
332 |
tctctctcacccataatctttagtcaatgttcaacaccaccaccgctaatggtgggtcttttcttcacttgctcttactcaagtatctcttga |
424 |
Q |
| |
|
||||||||| | || || ||| |||| || |||||||||| ||| |||| | || |||||||||||| ||| |||| |||||| ||||||||| |
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|
| T |
41905652 |
tctctctcaactattattttttgtcattgctcaacaccactaccactaacgatgtgtcttttcttcaattgttcttgctcaagcatctcttga |
41905560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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