View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18300_low_7 (Length: 389)

Name: NF18300_low_7
Description: NF18300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18300_low_7
NF18300_low_7
[»] chr2 (23 HSPs)
chr2 (1-389)||(37986760-37987152)
chr2 (305-384)||(23354646-23354725)
chr2 (307-372)||(25544479-25544544)
chr2 (305-377)||(38919199-38919271)
chr2 (305-384)||(23354989-23355068)
chr2 (260-363)||(24011043-24011146)
chr2 (309-375)||(10535757-10535823)
chr2 (344-384)||(12464882-12464922)
chr2 (321-389)||(12748665-12748733)
chr2 (276-360)||(11307963-11308053)
chr2 (242-323)||(4207909-4207989)
chr2 (301-378)||(19573970-19574047)
chr2 (346-389)||(38117194-38117237)
chr2 (346-384)||(15972859-15972897)
chr2 (335-384)||(10735202-10735251)
chr2 (328-381)||(12668440-12668493)
chr2 (352-389)||(26769492-26769529)
chr2 (344-389)||(42205868-42205913)
chr2 (328-384)||(12940952-12941008)
chr2 (328-384)||(18841030-18841086)
chr2 (328-384)||(20539691-20539747)
chr2 (328-376)||(30335411-30335459)
chr2 (267-311)||(41849354-41849398)
[»] chr7 (21 HSPs)
chr7 (284-384)||(4017767-4017867)
chr7 (290-378)||(38804534-38804622)
chr7 (269-372)||(7133236-7133339)
chr7 (305-363)||(29812658-29812716)
chr7 (282-385)||(23930204-23930307)
chr7 (306-384)||(43249979-43250057)
chr7 (269-363)||(5938479-5938573)
chr7 (314-363)||(23751907-23751956)
chr7 (327-384)||(30516373-30516430)
chr7 (328-384)||(27945027-27945083)
chr7 (300-363)||(10230062-10230125)
chr7 (324-378)||(23128674-23128728)
chr7 (344-381)||(927870-927907)
chr7 (314-363)||(22683758-22683807)
chr7 (328-385)||(22868027-22868084)
chr7 (348-389)||(29788689-29788729)
chr7 (348-384)||(6630949-6630985)
chr7 (328-384)||(9408351-9408407)
chr7 (328-384)||(15902808-15902864)
chr7 (328-384)||(23191882-23191938)
chr7 (328-384)||(32308106-32308162)
[»] chr5 (18 HSPs)
chr5 (284-363)||(43554528-43554607)
chr5 (269-384)||(26205718-26205833)
chr5 (277-363)||(25863211-25863297)
chr5 (321-379)||(42469212-42469270)
chr5 (301-361)||(39695989-39696049)
chr5 (290-383)||(14574029-14574121)
chr5 (269-384)||(21137675-21137788)
chr5 (314-383)||(7997169-7997238)
chr5 (314-371)||(31264437-31264494)
chr5 (328-383)||(24906318-24906373)
chr5 (346-389)||(31084304-31084347)
chr5 (329-384)||(36642780-36642835)
chr5 (346-384)||(9449455-9449493)
chr5 (326-384)||(9878047-9878105)
chr5 (324-372)||(2577193-2577241)
chr5 (328-384)||(14674255-14674311)
chr5 (324-384)||(15410461-15410521)
chr5 (344-384)||(41558716-41558756)
[»] chr3 (31 HSPs)
chr3 (245-378)||(25074781-25074914)
chr3 (260-384)||(25651980-25652104)
chr3 (297-384)||(14223839-14223926)
chr3 (300-373)||(25892457-25892530)
chr3 (284-369)||(27903633-27903718)
chr3 (314-378)||(15864825-15864889)
chr3 (291-369)||(25326427-25326505)
chr3 (328-389)||(20503446-20503507)
chr3 (314-371)||(34189426-34189483)
chr3 (283-363)||(12704629-12704709)
chr3 (300-378)||(8903424-8903501)
chr3 (314-384)||(24205044-24205114)
chr3 (326-383)||(10954939-10954996)
chr3 (301-362)||(34307770-34307831)
chr3 (304-389)||(41319303-41319388)
chr3 (329-384)||(10335304-10335359)
chr3 (284-363)||(21211295-21211374)
chr3 (346-389)||(21479099-21479142)
chr3 (346-389)||(26290352-26290395)
chr3 (346-389)||(40052313-40052356)
chr3 (347-389)||(14747542-14747584)
chr3 (305-363)||(52369782-52369840)
chr3 (314-363)||(3730168-3730217)
chr3 (324-389)||(20691300-20691365)
chr3 (328-384)||(8383243-8383299)
chr3 (328-384)||(10268503-10268559)
chr3 (328-384)||(15796311-15796367)
chr3 (329-373)||(16789668-16789712)
chr3 (344-372)||(26665134-26665162)
chr3 (301-384)||(29508430-29508514)
chr3 (328-384)||(55401061-55401117)
[»] chr6 (33 HSPs)
chr6 (284-384)||(17168436-17168536)
chr6 (269-384)||(26247412-26247526)
chr6 (308-384)||(6389729-6389805)
chr6 (269-389)||(34446546-34446666)
chr6 (307-389)||(19602177-19602259)
chr6 (308-384)||(2153884-2153960)
chr6 (344-389)||(4937573-4937618)
chr6 (344-389)||(4953282-4953327)
chr6 (314-372)||(13689196-13689254)
chr6 (328-384)||(5732527-5732583)
chr6 (328-384)||(7938102-7938158)
chr6 (328-384)||(16833294-16833350)
chr6 (317-384)||(3398605-3398671)
chr6 (317-384)||(7625108-7625175)
chr6 (324-383)||(9024189-9024248)
chr6 (346-389)||(12868710-12868753)
chr6 (283-357)||(4420156-4420225)
chr6 (315-377)||(6299505-6299567)
chr6 (315-377)||(6306315-6306377)
chr6 (346-384)||(8777008-8777046)
chr6 (338-384)||(10760868-10760914)
chr6 (314-363)||(12235522-12235571)
chr6 (330-383)||(17422274-17422327)
chr6 (340-384)||(677823-677867)
chr6 (328-384)||(7996395-7996451)
chr6 (328-384)||(8022350-8022406)
chr6 (352-384)||(8365560-8365592)
chr6 (328-384)||(10770691-10770747)
chr6 (328-384)||(12696310-12696366)
chr6 (328-384)||(16766683-16766739)
chr6 (328-384)||(17841606-17841662)
chr6 (346-382)||(32313392-32313428)
chr6 (328-384)||(34595120-34595176)
[»] chr1 (19 HSPs)
chr1 (260-363)||(42004897-42004999)
chr1 (296-363)||(6936385-6936452)
chr1 (244-362)||(20157283-20157401)
chr1 (298-372)||(40747760-40747834)
chr1 (328-389)||(22881633-22881694)
chr1 (269-386)||(17831486-17831606)
chr1 (328-384)||(46348400-46348456)
chr1 (321-384)||(36878447-36878510)
chr1 (347-389)||(3490426-3490468)
chr1 (347-389)||(6427442-6427484)
chr1 (346-384)||(37598818-37598856)
chr1 (316-389)||(39101187-39101258)
chr1 (346-383)||(609493-609530)
chr1 (346-383)||(10572624-10572661)
chr1 (318-371)||(45660776-45660829)
chr1 (328-384)||(1815243-1815299)
chr1 (328-388)||(24577203-24577263)
chr1 (328-384)||(38503306-38503362)
chr1 (352-384)||(48040503-48040535)
[»] chr4 (17 HSPs)
chr4 (282-378)||(24343499-24343595)
chr4 (260-383)||(20743221-20743350)
chr4 (269-363)||(3144611-3144704)
chr4 (282-384)||(7012052-7012160)
chr4 (269-389)||(31243500-31243626)
chr4 (242-377)||(53381527-53381658)
chr4 (305-378)||(6273936-6274009)
chr4 (283-363)||(18513213-18513293)
chr4 (300-388)||(23386127-23386216)
chr4 (328-384)||(16303283-16303339)
chr4 (321-361)||(49659533-49659573)
chr4 (346-379)||(12895309-12895342)
chr4 (296-384)||(20521836-20521922)
chr4 (352-384)||(19482654-19482686)
chr4 (328-384)||(21945489-21945545)
chr4 (328-384)||(36635310-36635366)
chr4 (321-369)||(50848313-50848361)
[»] chr8 (20 HSPs)
chr8 (269-378)||(14513132-14513241)
chr8 (305-372)||(13845232-13845299)
chr8 (301-384)||(3658133-3658216)
chr8 (306-385)||(44067501-44067580)
chr8 (314-384)||(39820415-39820485)
chr8 (314-363)||(35431143-35431192)
chr8 (329-389)||(11815810-11815870)
chr8 (321-384)||(28883888-28883951)
chr8 (307-389)||(40063934-40064014)
chr8 (301-384)||(15816113-15816202)
chr8 (314-363)||(1676719-1676768)
chr8 (328-389)||(13844613-13844674)
chr8 (328-384)||(4673442-4673498)
chr8 (328-388)||(4786355-4786415)
chr8 (279-363)||(8017493-8017577)
chr8 (319-362)||(12559114-12559157)
chr8 (346-384)||(36450789-36450827)
chr8 (310-379)||(18130531-18130600)
chr8 (308-372)||(13009490-13009554)
chr8 (328-384)||(20873055-20873111)
[»] scaffold0007 (1 HSPs)
scaffold0007 (306-384)||(225263-225341)
[»] scaffold0598 (1 HSPs)
scaffold0598 (305-384)||(8047-8126)
[»] scaffold0306 (1 HSPs)
scaffold0306 (346-384)||(13386-13424)
[»] scaffold0152 (1 HSPs)
scaffold0152 (346-384)||(21903-21941)
[»] scaffold0199 (1 HSPs)
scaffold0199 (314-363)||(1956-2005)
[»] scaffold0778 (1 HSPs)
scaffold0778 (299-373)||(4403-4477)
[»] scaffold0036 (1 HSPs)
scaffold0036 (271-309)||(35677-35715)
[»] scaffold0019 (1 HSPs)
scaffold0019 (347-389)||(71704-71746)
[»] scaffold0018 (1 HSPs)
scaffold0018 (346-384)||(178854-178892)
[»] scaffold0122 (1 HSPs)
scaffold0122 (340-389)||(7991-8040)
[»] scaffold0103 (1 HSPs)
scaffold0103 (328-384)||(51797-51853)
[»] scaffold0053 (1 HSPs)
scaffold0053 (328-384)||(8784-8840)
[»] scaffold0049 (1 HSPs)
scaffold0049 (324-360)||(56932-56968)
[»] scaffold0022 (1 HSPs)
scaffold0022 (328-384)||(90829-90885)
[»] scaffold0004 (1 HSPs)
scaffold0004 (328-384)||(92793-92849)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 37987152 - 37986760
Alignment:
Q  1 caattatgttagttcactcttaaactttttggaaagagtgctagatatatagattagatttgggacaagaaagattaaagaaaacaacttgttctaaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37987152 caattatgttagttcactcttaaactttttggaaagagtgctagatatatagattagatttgggacaagaaagattaaagaaaacaacttgttctaaaag 37987053  T
Q  101 aatataaaagagagagagatctcaactacccaagcataaaatgaggcattgccttgtattatatacagaaatagaaatgatacagctaattttttaatct 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37987052 aatataaaagagagagagatctcaactactcaagcataaaatgaggcattgccttgtattatatacagaaatagaaatgatacagctaattttttaatct 37986953  T
Q  201 taacctttagataagnnnnnnnnnnnnnnnnnngttatctt----aacctatgaaacatgaatactcttcgaattaggtgtgtttcggtgtcagacactc 296  Q
    |||||||||||||||                  ||||||||    |||||||||||||||||||||||||| ||||||| |||||| |||||||||||||    
T  37986952 taacctttagataagtttttttatttttgttttgttatcttaatcaacctatgaaacatgaatactcttcggattaggtttgtttccgtgtcagacactc 37986853  T
Q  297 gtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  37986852 gtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttttcaaattattatctgtgtcggcgtgtcagtgtcgtgtc 37986760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 305 - 384
Target Start/End: Original strand, 23354646 - 23354725
Alignment:
Q  305 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||| |||||| || |||| |||||    
T  23354646 ccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatctgtgtcagcatgtcggtgtc 23354725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 25544544 - 25544479
Alignment:
Q  307 gacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 372  Q
    |||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||  |||||||    
T  25544544 gacaccgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtcgg 25544479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 377
Target Start/End: Complemental strand, 38919271 - 38919199
Alignment:
Q  305 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgt 377  Q
    ||||||| ||||||| ||||||||||||||| || |||| ||||||||||||||||||| ||| |||| ||||    
T  38919271 ccgacactaacacgacacctatgattacactaaactataacattttctcaaattattatctgtatcggtgtgt 38919199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 305 - 384
Target Start/End: Original strand, 23354989 - 23355068
Alignment:
Q  305 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| ||| || |||||||||| |||| || |||||||||||||||||||||||| |||||| || |||| |||||    
T  23354989 ccgacaccgacatgacacctatgattgcactaaattatatcattttctcaaattattatctgtgtcagcatgtcggtgtc 23355068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 363
Target Start/End: Complemental strand, 24011146 - 24011043
Alignment:
Q  260 actcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaatta 359  Q
    |||||||| |||| |||||| | |||||| ||||| | || || || |||||| || ||| ||||||||||||||| || ||| ||||||||||||||||    
T  24011146 actcttcggattatgtgtgtcttggtgtcggacacgcatccgtatcagacaccgacgcgacacctatgattacactaaattatgtcattttctcaaatta 24011047  T
Q  360 ttat 363  Q
    ||||    
T  24011046 ttat 24011043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 10535757 - 10535823
Alignment:
Q  309 caccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgt 375  Q
    ||||||||||| || |||||||||||| || ||| ||||||||||||||||||||  ||||||||||    
T  10535757 caccaacacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgt 10535823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 12464882 - 12464922
Alignment:
Q  344 tcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  12464882 tcattttctcaaattattattggtgtcggcgtgtcagtgtc 12464922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 12748733 - 12748665
Alignment:
Q  321 acctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||||||||||||| || ||| ||||||||||||||||||||   |||| ||||||| ||||||||||    
T  12748733 acctatgattacactgaactatgtcattttctcaaattattatccatgtcagcgtgtccgtgtcgtgtc 12748665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 360
Target Start/End: Original strand, 11307963 - 11308053
Alignment:
Q  276 gtgtttcggtgtcagacactcgtcggtgtcc------gacaccaacacgatacctatgattacactcaaatatatcattttctcaaattat 360  Q
    ||||||||||||| ||||| |||||||||||      |||||| |||||| ||||||||||||||| || ||| ||||||| |||||||||    
T  11307963 gtgtttcggtgtcggacacgcgtcggtgtccaacaccgacaccgacacgacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 4207989 - 4207909
Alignment:
Q  242 aacctatgaaacatgaatactcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacc 323  Q
    ||||||||||||||||| |||||||| ||||   |||||||||||||  ||||  ||| |||||||||||| ||||||||||    
T  4207989 aacctatgaaacatgaacactcttcggattaaacgtgtttcggtgtcgaacacgtgtc-gtgtccgacaccgacacgatacc 4207909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 19574047 - 19573970
Alignment:
Q  301 gtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 378  Q
    |||||||||||| |||||  |||||| |||||||| || ||| | ||||||| ||||||||||  |||||||||||||    
T  19574047 gtgtccgacaccgacacgccacctataattacactgaattatgttattttcttaaattattatcggtgtcggcgtgtc 19573970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 38117194 - 38117237
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||| |||||||||||  |||||||||||||||||||||||||    
T  38117194 attttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 38117237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 15972897 - 15972859
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  15972897 attttttcaaattattaattgtgtcggcgtgtcagtgtc 15972859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 10735251 - 10735202
Alignment:
Q  335 tcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| |||||||| |||||||||||| |||||| ||||||| ||||    
T  10735251 tcaaatatttcattttcccaaattattattggtgtcgtcgtgtcaatgtc 10735202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 12668440 - 12668493
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagt 381  Q
    |||||||| || ||| ||||||| ||||||||||| || |||||||||||||||    
T  12668440 attacactgaattatgtcattttttcaaattattagttatgtcggcgtgtcagt 12668493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 389
Target Start/End: Complemental strand, 26769529 - 26769492
Alignment:
Q  352 tcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  26769529 tcaaattattagttgtgtcggcgtgtctgtgtcgtgtc 26769492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 42205868 - 42205913
Alignment:
Q  344 tcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||||||||||||||||||| |||| ||| ||||| |||||||||    
T  42205868 tcattttctcaaattattattggtgttggcatgtcaatgtcgtgtc 42205913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 12940952 - 12941008
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||||| ||||| ||||||||||| |||||||  ||||||||||||    
T  12940952 attacactgaattatatgattttttcaaattattagttgtgtcaacgtgtcagtgtc 12941008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 18841030 - 18841086
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| ||||||||||| ||||||| |||||||||||||    
T  18841030 attacacttaattatgtaattttttcaaattattagttgtgtcagcgtgtcagtgtc 18841086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 20539691 - 20539747
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||||| ||||| |||||||||||  ||||||| ||||||||||||    
T  20539691 attacactaaattatatgattttttcaaattattagctgtgtcgacgtgtcagtgtc 20539747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 30335459 - 30335411
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtg 376  Q
    |||||||| || ||| ||||||| ||||||||||| |||||||||||||    
T  30335459 attacactaaattatgtcattttttcaaattattagttgtgtcggcgtg 30335411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 41849398 - 41849354
Alignment:
Q  267 gaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacac 311  Q
    |||||||| ||||  ||||||||||||| ||||||||||||||||    
T  41849398 gaattaggcgtgtcgcggtgtcagacacgcgtcggtgtccgacac 41849354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 284 - 384
Target Start/End: Original strand, 4017767 - 4017867
Alignment:
Q  284 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 383  Q
    ||||||||||| |||||||||||||||||||||||| || |||||||||||| || |||||| |||||||||||||||||  ||||||||||||| ||||    
T  4017767 gtgtcagacacacgtcggtgtccgacaccaacacgacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcggcgtgtcggtgt 4017866  T
Q  384 c 384  Q
    |    
T  4017867 c 4017867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 290 - 378
Target Start/End: Original strand, 38804534 - 38804622
Alignment:
Q  290 gacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 378  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||  | ||| ||||||||| ||||||||||  |||||||||||||    
T  38804534 gacacacgtcggtgtccgacaccaacacgacacctatgattaccctggattatgtcattttctgaaattattatccgtgtcggcgtgtc 38804622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 7133236 - 7133339
Alignment:
Q  269 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 368  Q
    |||||||||||  | ||||| ||||| ||||||||||||||||| ||||   ||||||||||||||| || ||| ||||||||||||||||| || ||||    
T  7133236 attaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattatgtcattttctcaaattatcatctgtg 7133335  T
Q  369 tcgg 372  Q
    ||||    
T  7133336 tcgg 7133339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 29812658 - 29812716
Alignment:
Q  305 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    |||||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  29812658 ccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 385
Target Start/End: Complemental strand, 23930307 - 23930204
Alignment:
Q  282 cggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagt 381  Q
    ||||||| ||||| | ||||| ||||||||| |||| | ||||||||||||||| || ||| |||||||||||||||| |||  ||||||  |||||| |    
T  23930307 cggtgtcggacacgcatcggtatccgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattactatccgtgtcgatgtgtcaat 23930208  T
Q  382 gtcg 385  Q
    ||||    
T  23930207 gtcg 23930204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 43250057 - 43249979
Alignment:
Q  306 cgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||||| |||||| || ||| ||||||||  | ||| ||||||||||||||||||||  |||||||||||||||||||    
T  43250057 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtc 43249979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 363
Target Start/End: Complemental strand, 5938573 - 5938479
Alignment:
Q  269 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    |||||||||||| ||||||| ||||| | |||||||| |||||| |||| | |||||| |||| ||| || ||| | ||||| ||||||||||||    
T  5938573 attaggtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacctataattatactgaattatgttattttatcaaattattat 5938479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 23751956 - 23751907
Alignment:
Q  314 acacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||    
T  23751956 acacgacacctatgattacactaaattatatcattttatcaaattattat 23751907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 30516373 - 30516430
Alignment:
Q  327 gattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||||| | || |||||||||||||||||||||| || |||||| ||||||||||||    
T  30516373 gattacattgaattatatcattttctcaaattattgttagtgtcgacgtgtcagtgtc 30516430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 27945083 - 27945027
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||||||||||||||| | |||||||||||||||||||    
T  27945083 attacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtc 27945027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 363
Target Start/End: Original strand, 10230062 - 10230125
Alignment:
Q  300 ggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    |||||||||||||||||||| | ||||  ||||||| || ||| |||||| |||||||||||||    
T  10230062 ggtgtccgacaccaacacgacatctatacttacactgaattatgtcatttcctcaaattattat 10230125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 23128674 - 23128728
Alignment:
Q  324 tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 378  Q
    |||||||||||| || |||||  |||||||||||||||||| ||||| |||||||    
T  23128674 tatgattacactgaattatatggttttctcaaattattattggtgtcagcgtgtc 23128728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 927870 - 927907
Alignment:
Q  344 tcattttctcaaattattatttgtgtcggcgtgtcagt 381  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  927870 tcattttctcaaattattattagtgtcgacgtgtcagt 927907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 22683758 - 22683807
Alignment:
Q  314 acacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    |||||| |||||||||| |||| || |||||||| |||||||||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattat 22683807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 22868084 - 22868027
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcg 385  Q
    |||||||| || ||| | ||||||||| ||||||| | ||||||||||||||||||||    
T  22868084 attacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgtcg 22868027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 29788689 - 29788729
Alignment:
Q  348 tttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  29788689 tttctcaaattattatt-gtgtcgacgtgtcagtgtcgtgtc 29788729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 6630949 - 6630985
Alignment:
Q  348 tttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||||||||||||| | |||||||||||||||||||    
T  6630949 tttctcaaattattagtggtgtcggcgtgtcagtgtc 6630985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 9408351 - 9408407
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| ||||||||||| ||||||||| |||||||||||    
T  9408351 attacactaaattatgtgattttttcaaattattaattgtgtcggtgtgtcagtgtc 9408407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 15902864 - 15902808
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| ||||||||||||| |||||||| ||||||||||    
T  15902864 attacactaaattatgtgattttatcaaattattattggtgtcggcatgtcagtgtc 15902808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 23191938 - 23191882
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| |||||| | |||||||||||||||||   |||||||||| ||||||||    
T  23191938 attacactgaaatatgtgattttctcaaattattagcggtgtcggcgtatcagtgtc 23191882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 32308162 - 32308106
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | |||||||||||||||||   |||||||||||||||||||    
T  32308162 attacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 32308106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 284 - 363
Target Start/End: Complemental strand, 43554607 - 43554528
Alignment:
Q  284 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    ||||| ||||| ||||||||||||||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  43554607 gtgtcggacacgcgtcggtgtccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 384
Target Start/End: Original strand, 26205718 - 26205833
Alignment:
Q  269 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 368  Q
    |||| ||||||  ||||||| || || ||| |||||||||||||||||||| ||||||||||||||| || ||| ||||||||||||| | ||||  ||     
T  26205718 attacgtgtgtcccggtgtcggatacgcgttggtgtccgacaccaacacgacacctatgattacactgaattatgtcattttctcaaaattttatcggta 26205817  T
Q  369 tcggcgtgtcagtgtc 384  Q
    ||| ||||||||||||    
T  26205818 tcgacgtgtcagtgtc 26205833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 363
Target Start/End: Complemental strand, 25863297 - 25863211
Alignment:
Q  277 tgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    |||| ||||||||||||| | |||||| |||||||  |||||| || ||| |||||||| || ||||||||||||||||||||||||    
T  25863297 tgttccggtgtcagacacgcatcggtgcccgacactgacacgacacttataattacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 321 - 379
Target Start/End: Complemental strand, 42469270 - 42469212
Alignment:
Q  321 acctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtca 379  Q
    ||||||||||||||| |||||| ||||||||||||||||||||  ||||||||||||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatccgtgtcggcgtgtca 42469212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 39695989 - 39696049
Alignment:
Q  301 gtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattatt 361  Q
    ||||| |||||| |||||| ||||||||||||||| || ||||||||||||||||||||||    
T  39695989 gtgtcggacaccgacacgacacctatgattacactaaattatatcattttctcaaattatt 39696049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 383
Target Start/End: Original strand, 14574029 - 14574121
Alignment:
Q  290 gacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 383  Q
    ||||| |||||| |||||||||  |||||| |||||| |||||||| || ||||||||||  ||||||||||| | ||||||||||||| ||||    
T  14574029 gacacgcgtcggcgtccgacactgacacga-acctataattacactgaattatatcatttcatcaaattattactcgtgtcggcgtgtcggtgt 14574121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 384
Target Start/End: Complemental strand, 21137788 - 21137675
Alignment:
Q  269 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 368  Q
    |||||||||||  ||||||| ||||| ||| ||||||||||  | |||||| |||||||||| |||| || ||  ||||||||||| |||||||    ||    
T  21137788 attaggtgtgtcccggtgtcggacacgcgttggtgtccgac--cgacacgacacctatgatttcactgaattacgtcattttctcagattattaccgatg 21137691  T
Q  369 tcggcgtgtcagtgtc 384  Q
    ||||||||||||||||    
T  21137690 tcggcgtgtcagtgtc 21137675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 7997169 - 7997238
Alignment:
Q  314 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 383  Q
    |||||| || ||| ||||||||  | ||||||||||||||||||||||||  |||| |||||||||||||    
T  7997169 acacgacacttataattacactgtattatatcattttctcaaattattatccgtgttggcgtgtcagtgt 7997238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 31264494 - 31264437
Alignment:
Q  314 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcg 371  Q
    |||||| || |||||||||||| || ||| ||||||||||||||||||| ||||||||    
T  31264494 acacgacacttatgattacactgaattatgtcattttctcaaattattacttgtgtcg 31264437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 24906318 - 24906373
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 383  Q
    |||||||| || ||| ||||||| |||||||||||| ||||| |||||||||||||    
T  24906318 attacactgaattatgtcattttttcaaattattatctgtgttggcgtgtcagtgt 24906373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 31084347 - 31084304
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||| |||||||||||  |||||||||||||||||||||||||    
T  31084347 attttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 31084304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 36642780 - 36642835
Alignment:
Q  329 ttacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||||| |||||| ||| ||| |||||||||||  ||||||||||||||||||||    
T  36642780 ttacactaaaatatgtcactttttcaaattattaactgtgtcggcgtgtcagtgtc 36642835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 9449493 - 9449455
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  9449493 attttctcaaattattattggtgtcggcgtgccagtgtc 9449455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 384
Target Start/End: Original strand, 9878047 - 9878105
Alignment:
Q  326 tgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| |||| ||  |||| |||||||||||||||| |||||| ||||||||||||    
T  9878047 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtc 9878105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 372
Target Start/End: Original strand, 2577193 - 2577241
Alignment:
Q  324 tatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 372  Q
    |||||||||||| || ||| ||||||||||||||||||||  |||||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgtcgg 2577241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 14674311 - 14674255
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  14674311 attacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 14674255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 384
Target Start/End: Original strand, 15410461 - 15410521
Alignment:
Q  324 tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||||||| ||  |||| ||||||| |||||||||   |||||||||||||||||||    
T  15410461 tatgattacactgaatcatataattttcttaaattattagcggtgtcggcgtgtcagtgtc 15410521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 41558716 - 41558756
Alignment:
Q  344 tcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||||||||||||||||||||||   |||||||||||    
T  41558716 tcattttctcaaattattatttgtgtcaatgtgtcagtgtc 41558756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 378
Target Start/End: Complemental strand, 25074914 - 25074781
Alignment:
Q  245 ctatgaaacatgaatactcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatat 344  Q
    ||||||| || ||| |||| ||| |||||||||||  | ||||| ||||| ||| |||||| |||||| |||| |  ||||||||||||||||| ||| |    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatgt 25074815  T
Q  345 cattttctcaaattattatttgtgtcggcgtgtc 378  Q
    |||||||||||||||||||  |||||||||||||    
T  25074814 cattttctcaaattattatcggtgtcggcgtgtc 25074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 260 - 384
Target Start/End: Original strand, 25651980 - 25652104
Alignment:
Q  260 actcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaatta 359  Q
    |||||||| ||||||||||| ||||||||  ||||  |||||||||| ||||  |||| | |||||| | |||||| || ||||||||||||||||||||    
T  25651980 actcttcggattaggtgtgtctcggtgtcgaacacgtgtcggtgtccaacactgacacaacacctataactacactgaattatatcattttctcaaatta 25652079  T
Q  360 ttatttgtgtcggcgtgtcagtgtc 384  Q
    ||||  |||| ||||||| ||||||    
T  25652080 ttatccgtgttggcgtgttagtgtc 25652104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 297 - 384
Target Start/End: Original strand, 14223839 - 14223926
Alignment:
Q  297 gtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||||||| |||||| |||||| || ||||| |||||| || |||||| ||||||||||||||||| |||||||||||||| |||||    
T  14223839 gtcggtgtcggacaccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatctgtgtcggcgtgtcggtgtc 14223926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 25892530 - 25892457
Alignment:
Q  300 ggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggc 373  Q
    ||||||||||||  |||||| ||||||||||||||| || ||||||||||||| |||||||||||||| |||||    
T  25892530 ggtgtccgacactgacacgacacctatgattacactgaattatatcattttcttaaattattatttgtttcggc 25892457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 27903718 - 27903633
Alignment:
Q  284 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgt 369  Q
    ||||||||||| ||||||| ||||||||| |||| | || |||||||||| | || |||||| ||||||||||||||||| |||||    
T  27903718 gtgtcagacacgcgtcggtatccgacaccgacacaacacttatgattacattaaattatatcgttttctcaaattattatctgtgt 27903633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 378
Target Start/End: Complemental strand, 15864889 - 15864825
Alignment:
Q  314 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 378  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||  |||||||||||||    
T  15864889 acacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcggcgtgtc 15864825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 369
Target Start/End: Complemental strand, 25326505 - 25326427
Alignment:
Q  291 acactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgt 369  Q
    |||| |||||||||||||||||||||||| | |||| |||||||| || ||||| ||||| | |||||||||| |||||    
T  25326505 acacgcgtcggtgtccgacaccaacacgacatctataattacactaaattatattatttttttaaattattatctgtgt 25326427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 20503507 - 20503446
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    |||||||| || ||| ||||||| ||||||||||  ||||||||||||||||||||||||||    
T  20503507 attacactgaattatgtcattttttcaaattatttgttgtgtcggcgtgtcagtgtcgtgtc 20503446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 34189483 - 34189426
Alignment:
Q  314 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcg 371  Q
    |||||| ||||| ||||||||| |||||| |||||||||||||||||||| |||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatctgtgtcg 34189426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 12704629 - 12704709
Alignment:
Q  283 ggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    |||||| ||||  ||| ||||||||||||| |||||| ||||||||||||| | || ||| ||||||| ||||||||||||    
T  12704629 ggtgtcggacatgcgttggtgtccgacaccgacacgacacctatgattacattgaattatgtcattttttcaaattattat 12704709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 8903501 - 8903424
Alignment:
Q  300 ggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 378  Q
    |||||||| || | |||||| |||||| |||||||| |||||| ||||||||||||| ||||||  |||||||||||||    
T  8903501 ggtgtccggcatcgacacgacacctataattacact-aaatatgtcattttctcaaaatattatccgtgtcggcgtgtc 8903424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 24205044 - 24205114
Alignment:
Q  314 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||| || ||| ||||||||  | ||| ||||||||||||||||||||  |||||||||||||||||||    
T  24205044 acacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtc 24205114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 10954996 - 10954939
Alignment:
Q  326 tgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 383  Q
    |||||||||| || ||| | ||||| ||||||||||| ||||||||||||||||||||    
T  10954996 tgattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgt 10954939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 34307770 - 34307831
Alignment:
Q  301 gtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattatta 362  Q
    |||||||||||| |||||| || ||| |||||||| |||||| | |||||||||||||||||    
T  34307770 gtgtccgacaccgacacgacacttataattacactgaaatatgtgattttctcaaattatta 34307831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 389
Target Start/End: Original strand, 41319303 - 41319388
Alignment:
Q  304 tccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||||||| |||||| || ||  |||||| | || ||| ||||||| ||||||||||||| |||||| |||||| ||||||||||    
T  41319303 tccgacaccgacacgacacatacaattacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtcgtgtc 41319388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 10335304 - 10335359
Alignment:
Q  329 ttacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||||| |||||| | | ||| ||||||||||| |||||||||||||||||||||    
T  10335304 ttacactaaaatatgtgactttttcaaattattagttgtgtcggcgtgtcagtgtc 10335359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 363
Target Start/End: Complemental strand, 21211374 - 21211295
Alignment:
Q  284 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    ||||| ||||| ||||||||||  ||||| |||||| ||| || |||||||| || ||| | ||||||||||||||||||    
T  21211374 gtgtcggacacgcgtcggtgtcgaacaccgacacgacacccataattacactgaactatgtaattttctcaaattattat 21211295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 21479142 - 21479099
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||| |||||||||||  |||||||||||||||||||||||||    
T  21479142 attttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 21479099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 26290395 - 26290352
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||    
T  26290395 attttctcaaattattaatggtgtcggcgtgtcagtgtcttgtc 26290352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 40052356 - 40052313
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||| |||||||||||  |||||||||||||||||||||||||    
T  40052356 attttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 40052313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 389
Target Start/End: Complemental strand, 14747584 - 14747542
Alignment:
Q  347 ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    |||| |||||||||||  |||||||||||||||||||||||||    
T  14747584 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 14747542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 52369840 - 52369782
Alignment:
Q  305 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    |||||||| |||||| ||||||||||||| | || ||| | ||||||||||||||||||    
T  52369840 ccgacaccgacacgacacctatgattacattgaattatgtaattttctcaaattattat 52369782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 3730168 - 3730217
Alignment:
Q  314 acacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    |||||| ||||||||||||||| || ||| ||||| ||||||||||||||    
T  3730168 acacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 389
Target Start/End: Complemental strand, 20691365 - 20691300
Alignment:
Q  324 tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    |||||||||||| || ||| ||||||||||||||||||||  || ||  ||||||||||| |||||    
T  20691365 tatgattacactgaattatgtcattttctcaaattattatcagtttctacgtgtcagtgttgtgtc 20691300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 8383299 - 8383243
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||||| |||||||||||||||||   |||||||||||||| ||||    
T  8383299 attacactgaattatatgattttctcaaattattagcggtgtcggcgtgtcaatgtc 8383243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 10268503 - 10268559
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  10268503 attacactaaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtc 10268559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 15796311 - 15796367
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||||| ||||| |||||||||||  ||||||||||||||| ||||    
T  15796311 attacactgaattatatgattttttcaaattattaactgtgtcggcgtgtcattgtc 15796367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 16789668 - 16789712
Alignment:
Q  329 ttacactcaaatatatcattttctcaaattattatttgtgtcggc 373  Q
    ||||||| || ||| |||||||||||||||||||| |||||||||    
T  16789668 ttacactgaattatgtcattttctcaaattattatctgtgtcggc 16789712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 372
Target Start/End: Complemental strand, 26665162 - 26665134
Alignment:
Q  344 tcattttctcaaattattatttgtgtcgg 372  Q
    |||||||||||||||||||||||||||||    
T  26665162 tcattttctcaaattattatttgtgtcgg 26665134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 384
Target Start/End: Complemental strand, 29508514 - 29508430
Alignment:
Q  301 gtgtccgacaccaaca-cgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||||||||||| ||| || ||| |||||||| || ||||| ||||| ||||||||||| | || |||| |||||| ||||    
T  29508514 gtgtccgacaccaacatcgacacatataattacactgaattatatgattttttcaaattattagtggtatcggtgtgtcaatgtc 29508430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 55401117 - 55401061
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| ||||||||||| |||||||||||| ||||||||    
T  55401117 attacactaaattatgtgattttttcaaattattagttgtgtcggcgtatcagtgtc 55401061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 384
Target Start/End: Original strand, 17168436 - 17168536
Alignment:
Q  284 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 383  Q
    |||| ||||||  ||| |||||||||||| |||||| |||||| |||||||| || ||||||||||||||||||||||||  |||| |||||||||||||    
T  17168436 gtgttagacacgtgtcagtgtccgacaccgacacgacacctattattacactaaattatatcattttctcaaattattatcagtgttggcgtgtcagtgt 17168535  T
Q  384 c 384  Q
    |    
T  17168536 c 17168536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 384
Target Start/End: Complemental strand, 26247526 - 26247412
Alignment:
Q  269 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 368  Q
    |||||||||||| |||||||||||||  || ||||||||||||| |||||| ||||||||||| ||| |||||| ||||||||| ||||||||||  ||     
T  26247526 attaggtgtgtt-cggtgtcagacacgtgttggtgtccgacaccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatccgta 26247428  T
Q  369 tcggcgtgtcagtgtc 384  Q
    || | |||||||||||    
T  26247427 tctgtgtgtcagtgtc 26247412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 308 - 384
Target Start/End: Complemental strand, 6389805 - 6389729
Alignment:
Q  308 acaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||  |||||||||||| ||||||    
T  6389805 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgtgagtgtc 6389729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 269 - 389
Target Start/End: Complemental strand, 34446666 - 34446546
Alignment:
Q  269 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 368  Q
    |||||||||||  | |||||||| || |||||||||  |||||| |||||| ||||||||||||||| || ||| ||||||||||||||||||||  |||    
T  34446666 attaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacctatgattacactgaattatgtcattttctcaaattattatccgtg 34446567  T
Q  369 tcggcgtgtcagtgtcgtgtc 389  Q
    || | ||||| ||||| ||||    
T  34446566 tcagagtgtctgtgtcatgtc 34446546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 389
Target Start/End: Original strand, 19602177 - 19602259
Alignment:
Q  307 gacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    |||||| |||| ||||||||||||||||| || ||||||||||||||||||||||||  |||| || ||||| |||| |||||    
T  19602177 gacaccgacacaatacctatgattacactgaattatatcattttctcaaattattatcagtgttggtgtgtccgtgttgtgtc 19602259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 384
Target Start/End: Original strand, 2153884 - 2153960
Alignment:
Q  308 acaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| ||| |||||| |||||||| || ||||||||||||| |||||||| || ||||||||||||| |||||    
T  2153884 acaccaacgcgacacctataattacactaaattatatcattttcttaaattattgttcgtgtcggcgtgtcggtgtc 2153960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 389
Target Start/End: Complemental strand, 4937618 - 4937573
Alignment:
Q  344 tcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||    
T  4937618 tcatttgctcaaattattatttgtgtcggcgtgtgagtgtcgtgtc 4937573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 389
Target Start/End: Complemental strand, 4953327 - 4953282
Alignment:
Q  344 tcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||    
T  4953327 tcatttgctcaaattattatttgtgtcggcgtgtgagtgtcgtgtc 4953282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 13689196 - 13689254
Alignment:
Q  314 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 372  Q
    |||||||||||||||||||| | |||| | | |||||||||||||||||| ||||||||    
T  13689196 acacgatacctatgattacattgaaatttgttattttctcaaattattatctgtgtcgg 13689254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 5732527 - 5732583
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| |||||| | |||||||||||||||||   |||||||||||||||||||    
T  5732527 attacactaaaatatgtgattttctcaaattattaacggtgtcggcgtgtcagtgtc 5732583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 7938158 - 7938102
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||||| ||||| |||||||||||  ||||||||||||||||||||    
T  7938158 attacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtc 7938102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 16833350 - 16833294
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| ||||||||||| |||||||||||||||||||||    
T  16833350 attacactgaagtatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtc 16833294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 384
Target Start/End: Complemental strand, 3398671 - 3398605
Alignment:
Q  317 cgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||| ||| |||||||| || ||||| ||||| |||||||||||  ||||||||||||||||||||    
T  3398671 cgatacttataattacactgaattatatgatttt-tcaaattattagctgtgtcggcgtgtcagtgtc 3398605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 384
Target Start/End: Complemental strand, 7625175 - 7625108
Alignment:
Q  317 cgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||| ||||| |||| ||| || ||||||||||||||||||||||||  |||||| |||||| |||||    
T  7625175 cgattcctataattatactaaattatatcattttctcaaattattatccgtgtcgacgtgtcggtgtc 7625108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 383
Target Start/End: Original strand, 9024189 - 9024248
Alignment:
Q  324 tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 383  Q
    |||||||||| | || ||| ||||||||||||||||| |||||||||| |||||| ||||    
T  9024189 tatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtccgtgt 9024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 12868710 - 12868753
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||| |||||||||||  |||||||||||||||||||||||||    
T  12868710 attttttcaaattattaactgtgtcggcgtgtcagtgtcgtgtc 12868753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 4420156 - 4420225
Alignment:
Q  283 ggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaat 357  Q
    |||||||||||| ||| |||||| |||||||||||     ||||| ||||||| || ||||||||||||||||||    
T  4420156 ggtgtcagacacacgttggtgtctgacaccaacac-----ctatggttacactgaattatatcattttctcaaat 4420225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 6299567 - 6299505
Alignment:
Q  315 cacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgt 377  Q
    ||||| |||||| |||||| | || ||||||||||||||||||||||||   |||||||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgt 6299505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 6306377 - 6306315
Alignment:
Q  315 cacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgt 377  Q
    ||||| |||||| |||||| | || ||||||||||||||||||||||||   |||||||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgt 6306315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 384
Target Start/End: Original strand, 8777008 - 8777046
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  8777008 attttttcaaattattagttgtgtcggcgtgtcagtgtc 8777046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 10760868 - 10760914
Alignment:
Q  338 aatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||| ||||||||||||||||||||  |||||| ||||||||||||    
T  10760868 aatatgtcattttctcaaattattatcagtgtcgacgtgtcagtgtc 10760914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 12235522 - 12235571
Alignment:
Q  314 acacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    |||||| ||||||||||||||| || ||| |||||||||| |||||||||    
T  12235522 acacgacacctatgattacactgaattatgtcattttctctaattattat 12235571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 17422274 - 17422327
Alignment:
Q  330 tacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 383  Q
    |||| |||| ||||||||||||||||||||||||  |||||| ||||| |||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtcgacgtgttagtgt 17422327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 677867 - 677823
Alignment:
Q  340 tatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||| |||||||||||||||||   |||||||||||||||||||    
T  677867 tatatgattttctcaaattattaacagtgtcggcgtgtcagtgtc 677823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 7996395 - 7996451
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||||| |||||||||||||||||   |||||||| ||||||||||    
T  7996395 attacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtc 7996451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 8022406 - 8022350
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||||| |||||||||||||||||   |||||||| ||||||||||    
T  8022406 attacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtc 8022350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 8365560 - 8365592
Alignment:
Q  352 tcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||||||||| |||||||||||||||||||||    
T  8365560 tcaaattattagttgtgtcggcgtgtcagtgtc 8365592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 10770691 - 10770747
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| ||||||||||| |||||| ||||||||||||||    
T  10770691 attacactgaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtc 10770747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 12696366 - 12696310
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  12696366 attacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtc 12696310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 16766739 - 16766683
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  16766739 attacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 16766683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 17841606 - 17841662
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  17841606 attacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 17841662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 382
Target Start/End: Complemental strand, 32313428 - 32313392
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtg 382  Q
    |||||||||| |||||||| |||||||||||||||||    
T  32313428 attttctcaacttattattggtgtcggcgtgtcagtg 32313392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 34595176 - 34595120
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| ||||||||||| |||||||||||||||| ||||    
T  34595176 attacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtc 34595120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 260 - 363
Target Start/End: Original strand, 42004897 - 42004999
Alignment:
Q  260 actcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaatta 359  Q
    ||||||||||||||| |||||| | |||| ||||  ||||||||||||||||| |||| | ||||||||||||||| || ||| ||||||||||||||||    
T  42004897 actcttcgaattaggcgtgtttag-tgtcggacatgcgtcggtgtccgacaccgacacaacacctatgattacactaaattatgtcattttctcaaatta 42004995  T
Q  360 ttat 363  Q
    ||||    
T  42004996 ttat 42004999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 6936385 - 6936452
Alignment:
Q  296 cgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    ||||||||||||||||  |||||| ||||||||||||||| || ||| ||||||||||| ||||||||    
T  6936385 cgtcggtgtccgacacagacacgacacctatgattacacttaattatgtcattttctcagattattat 6936452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 362
Target Start/End: Original strand, 20157283 - 20157401
Alignment:
Q  244 cctatgaaacatgaatactcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatata 343  Q
    |||||||| || | |||||| || |||||||||||| |||||||| ||||| |||||||||| ||||| |   ||| || |||||||||||| || |||     
T  20157283 cctatgaagcacggatactcctcaaattaggtgtgtctcggtgtcggacacgcgtcggtgtcggacacgacaccgacacatatgattacactgaattatg 20157382  T
Q  344 tcattttctcaaattatta 362  Q
    | ||||||||| |||||||    
T  20157383 tgattttctcacattatta 20157401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 40747760 - 40747834
Alignment:
Q  298 tcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 372  Q
    ||||||||||||||||||| || |||||| |||||| | || ||| ||||||||||||||||||||  |||||||    
T  40747760 tcggtgtccgacaccaacatgacacctataattacattgaattatgtcattttctcaaattattatccgtgtcgg 40747834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 22881633 - 22881694
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    |||||||| || ||| | ||||| ||||||||||| ||||||||||||||||||||||||||    
T  22881633 attacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtcgtgtc 22881694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 386
Target Start/End: Original strand, 17831486 - 17831606
Alignment:
Q  269 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgat---acctatgattacactcaaatatatcattttctcaaattattattt 365  Q
    |||||| ||||  ||||||| |||||  |||||||||||||||  ||||||    || |||||||||||| ||  || | |||||||||||||||||       
T  17831486 attaggcgtgtcccggtgtcggacacatgtcggtgtccgacactgacacgacgacacatatgattacactgaataatgtgattttctcaaattattagcg 17831585  T
Q  366 gtgtcggcgtgtcagtgtcgt 386  Q
    |||||||||||||||||||||    
T  17831586 gtgtcggcgtgtcagtgtcgt 17831606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 46348400 - 46348456
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||||| ||||| |||||||||||  ||||||||||||||||||||    
T  46348400 attacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtc 46348456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 36878510 - 36878447
Alignment:
Q  321 acctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||| |||||||| || ||| | |||||||||||||||||   |||||||||||||||||||    
T  36878510 acctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 389
Target Start/End: Original strand, 3490426 - 3490468
Alignment:
Q  347 ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||||||||||||||   ||||||||||||||||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagtgtcgtgtc 3490468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 389
Target Start/End: Complemental strand, 6427484 - 6427442
Alignment:
Q  347 ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    |||| ||||||||||| |||||||||| |||||||||||||||    
T  6427484 ttttttcaaattattagttgtgtcggcatgtcagtgtcgtgtc 6427442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 37598856 - 37598818
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  37598856 attttttcaaattattagttgtgtcggcgtgtcagtgtc 37598818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 39101187 - 39101258
Alignment:
Q  316 acgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    |||| |||||| |||||||| || ||| | |||||||||||||||||| |||||||  ||||| ||||||||||    
T  39101187 acgacacctataattacacttaattatgttattttctcaaattattatatgtgtcg--gtgtctgtgtcgtgtc 39101258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 383
Target Start/End: Original strand, 609493 - 609530
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgt 383  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  609493 attttctcaaattattagtggtgtcggcgtgtcagtgt 609530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 383
Target Start/End: Original strand, 10572624 - 10572661
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgt 383  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  10572624 attttctcaaattattagtggtgtcggcgtgtcagtgt 10572661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 45660776 - 45660829
Alignment:
Q  318 gatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcg 371  Q
    |||||||||||||||| |||| |||  ||| |||||||||||||||| ||||||    
T  45660776 gatacctatgattacattcaattatgacatattctcaaattattattggtgtcg 45660829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 1815299 - 1815243
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| | |||| ||||||||||||||||||||||||||    
T  1815299 attacactgaattatgtgattttttaaaataattatttgtgtcggcgtgtcagtgtc 1815243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 24577203 - 24577263
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgt 388  Q
    |||||||| || ||| | ||||| ||||||||||| ||||||| ||||||| |||||||||    
T  24577203 attacactgaattatgtgattttttcaaattattagttgtgtcagcgtgtccgtgtcgtgt 24577263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 38503362 - 38503306
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| |||||||| |||||||||||||||||   ||||||| |||| ||||||    
T  38503362 attacactgaaatatatgattttctcaaattattagcggtgtcggtgtgttagtgtc 38503306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 48040503 - 48040535
Alignment:
Q  352 tcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||||||| ||||||||||||||||||||    
T  48040503 tcaaattattatctgtgtcggcgtgtcagtgtc 48040535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 282 - 378
Target Start/End: Complemental strand, 24343595 - 24343499
Alignment:
Q  282 cggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 378  Q
    ||||||| ||||| |||||||||| |||||| |||||| |||||| |||||||| || ||| | ||||||||||||||||||  |||||||||||||    
T  24343595 cggtgtcggacacgcgtcggtgtcggacaccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtc 24343499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 383
Target Start/End: Original strand, 20743221 - 20743350
Alignment:
Q  260 actcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtc------cgacaccaacacgatacctatgattacactcaaatatatcattttctc 353  Q
    |||| ||| ||||| |||||| ||||||| |||||  |||||||||      ||||||| |||| | ||||||||||||||| || ||| ||||||||||    
T  20743221 actcatcggattagatgtgttccggtgtcggacacgtgtcggtgtctgacatcgacaccgacacaacacctatgattacactgaattatgtcattttctc 20743320  T
Q  354 aaattattatttgtgtcggcgtgtcagtgt 383  Q
    ||||||||||  ||||||||||||||||||    
T  20743321 aaattattatccgtgtcggcgtgtcagtgt 20743350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 363
Target Start/End: Original strand, 3144611 - 3144704
Alignment:
Q  269 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    ||||||||||| ||| |||  ||||| ||| |||||| |||||| |||||| ||||||||||||||| || ||||||||||||| ||||||||||    
T  3144611 attaggtgtgtctcg-tgttggacacgcgttggtgtctgacaccgacacgacacctatgattacactaaattatatcattttctgaaattattat 3144704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 7012160 - 7012052
Alignment:
Q  282 cggtgtcagacactcgtcggtgtccgacaccaacac------gatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgt 375  Q
    ||||||| || || ||||||||||||||||| ||||      |||||||||||| ||||| || ||| ||||||||||||||||||||  ||||||||||    
T  7012160 cggtgtcggatacgcgtcggtgtccgacaccgacacaacaccgatacctatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgt 7012061  T
Q  376 gtcagtgtc 384  Q
    ||| |||||    
T  7012060 gtcggtgtc 7012052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 389
Target Start/End: Original strand, 31243500 - 31243626
Alignment:
Q  269 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacac------gatacctatgattacactcaaatatatcattttctcaaattatta 362  Q
    |||||||||||   ||||||  |||| | ||||||||||||||||||||      || ||||||||||||||| || ||| |||||||||||||||||||    
T  31243500 attaggtgtgtcctggtgtcgaacacgcatcggtgtccgacaccaacaccgacatgacacctatgattacactgaattatgtcattttctcaaattatta 31243599  T
Q  363 tttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    |  ||||||  ||| | ||||||||||    
T  31243600 taagtgtcgatgtgcctgtgtcgtgtc 31243626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 377
Target Start/End: Original strand, 53381527 - 53381658
Alignment:
Q  242 aacctatgaaacatgaatactcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaata 341  Q
    |||||||||| || | | |||| ||| |||||||||||  ||||||| || || |||| |||||||||||| ||||||  ||||| |||||||| ||       
T  53381527 aacctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacaccgacacgacgcctataattacactgaa--- 53381623  T
Q  342 tatcattttctcaaattattatttgtgtcggcgtgt 377  Q
      ||||||||| ||||||||||  ||||||||||||    
T  53381624 -ttcattttcttaaattattatcggtgtcggcgtgt 53381658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 378
Target Start/End: Complemental strand, 6274009 - 6273936
Alignment:
Q  305 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 378  Q
    |||||||| ||||||   |||| |||||||| || |||||||||||||||||||||| | |||||| |||||||    
T  6274009 ccgacaccgacacgacgactataattacactaaattatatcattttctcaaattattgtctgtgtcagcgtgtc 6273936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 18513213 - 18513293
Alignment:
Q  283 ggtgtcagacactcgtcggtgtccgacaccaacac-gatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    |||||| ||||| |||||||||||||||| ||||| || || |||||||||| | || ||| ||||||||||||||||||||    
T  18513213 ggtgtcggacacacgtcggtgtccgacac-aacactgacacatatgattacattgaattatgtcattttctcaaattattat 18513293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 388
Target Start/End: Complemental strand, 23386216 - 23386127
Alignment:
Q  300 ggtgtccgacaccaacacgatacctatgattacactcaaatatatca-ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgt 388  Q
    ||||||||||||| ||| || ||||||||||||||| || ||||||| |||| | ||||||| ||  || |||||| |||||||||||||    
T  23386216 ggtgtccgacaccgacatgacacctatgattacactaaattatatcattttttttaaattatcatccgtatcggcgagtcagtgtcgtgt 23386127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 16303283 - 16303339
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||||||||||| ||||| |||||| | ||||||||||||||||||    
T  16303283 attacactaaattatatcattttttcaaaatattatctttgtcggcgtgtcagtgtc 16303339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 49659533 - 49659573
Alignment:
Q  321 acctatgattacactcaaatatatcattttctcaaattatt 361  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  49659533 acctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 379
Target Start/End: Original strand, 12895309 - 12895342
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtca 379  Q
    ||||| ||||||||||||||||||||||||||||    
T  12895309 attttttcaaattattatttgtgtcggcgtgtca 12895342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 384
Target Start/End: Original strand, 20521836 - 20521922
Alignment:
Q  296 cgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||||||||||||||| |||||| ||  |||||| || | || ||| | ||||| ||||||||||||  || ||||||||||||||||    
T  20521836 cgtcggtgtccgacaccgacacgacac--atgatttcattgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtc 20521922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 19482686 - 19482654
Alignment:
Q  352 tcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||||||||| |||||||||||||||||||||    
T  19482686 tcaaattattagttgtgtcggcgtgtcagtgtc 19482654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 21945545 - 21945489
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| ||||||| |||||||||||  ||||||||| ||||||||||    
T  21945545 attacactgaattatgtcattttttcaaattattagctgtgtcggcatgtcagtgtc 21945489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 36635366 - 36635310
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||||||||||||||| | |||| ||||||||||||||    
T  36635366 attacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtc 36635310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 50848313 - 50848361
Alignment:
Q  321 acctatgattacactcaaatatatcattttctcaaattattatttgtgt 369  Q
    ||||| ||||||||| || ||||||||||| ||||||||||||| ||||    
T  50848313 acctacgattacactgaattatatcattttttcaaattattattggtgt 50848361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 378
Target Start/End: Original strand, 14513132 - 14513241
Alignment:
Q  269 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 368  Q
    |||||||||||| ||||||| ||||  |||||||||| |||||| |||| | | |||||||||| || || ||| | |||||||||||||||||||| ||    
T  14513132 attaggtgtgttccggtgtcggacatgcgtcggtgtctgacaccgacaccaaatctatgattacgctgaattatgtaattttctcaaattattatttttg 14513231  T
Q  369 tcggcgtgtc 378  Q
    | ||||||||    
T  14513232 ttggcgtgtc 14513241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 372
Target Start/End: Complemental strand, 13845299 - 13845232
Alignment:
Q  305 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 372  Q
    |||||||  |||||| |||||||||||| || || |||||||||||||||||||||||||||||||||    
T  13845299 ccgacacagacacgacacctatgattactctaaattatatcattttctcaaattattatttgtgtcgg 13845232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 384
Target Start/End: Complemental strand, 3658216 - 3658133
Alignment:
Q  301 gtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||||| |||||||| ||||||||||||||| || || || ||||||||||||||||||  ||||||  ||||| |||||    
T  3658216 gtgtccgacatcaacacgacacctatgattacactgaactacattattttctcaaattattatccgtgtcgatgtgtcggtgtc 3658133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 385
Target Start/End: Complemental strand, 44067580 - 44067501
Alignment:
Q  306 cgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcg 385  Q
    ||||||| |||||| || ||| ||||||||  | ||| ||||||||||||||||||||  ||||||||||||||||||||    
T  44067580 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcg 44067501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 39820485 - 39820415
Alignment:
Q  314 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||| ||||||||||||||| || ||||||||||||||||||||||||  | ||| ||||||| |||||    
T  39820485 acacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcagcgtgtcggtgtc 39820415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 35431143 - 35431192
Alignment:
Q  314 acacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  35431143 acacgacacctatgattacactaaaatatgtcattttctcaaattattat 35431192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 11815870 - 11815810
Alignment:
Q  329 ttacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||| |||| |||| |||||||||||||||||||| |||||  |||||||||||||||||    
T  11815870 ttacattcaattataacattttctcaaattattattggtgtcaacgtgtcagtgtcgtgtc 11815810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 28883888 - 28883951
Alignment:
Q  321 acctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||||| |||| || ||| ||||||||||||||||||||| ||| |||| ||||||||||    
T  28883888 acctatgattccactgaattatgtcattttctcaaattattattcgtggcggcatgtcagtgtc 28883951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 389
Target Start/End: Complemental strand, 40064014 - 40063934
Alignment:
Q  307 gacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    |||||| ||||||  |||||||||||| | || ||| ||||||||||||||||||||| ||||||  ||||| ||||||||||    
T  40064014 gacaccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattattggtgtcg--gtgtccgtgtcgtgtc 40063934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 15816113 - 15816202
Alignment:
Q  301 gtgtccgacaccaacacgatacc------tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||||||||||||||||| |||      ||| |||||||| || ||| | ||||| ||||||||||| |||||||||||||||||||||    
T  15816113 gtgtccgacaccaacacgacaccgacacttataattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtc 15816202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 1676768 - 1676719
Alignment:
Q  314 acacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    |||||| ||||||||||||||| |||||| |||||||| |||||||||||    
T  1676768 acacgacacctatgattacactaaaatatgtcattttcacaaattattat 1676719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 13844613 - 13844674
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||||||||| ||| | |||||||||||||||||   ||||||||||||| ||||||||||    
T  13844613 attacactcaattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgtcgtgtc 13844674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 4673442 - 4673498
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || | ||| ||||| |||||||||||| ||||||||||||||||||||    
T  4673442 attacactgaattttatgattttttcaaattattatctgtgtcggcgtgtcagtgtc 4673498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 4786355 - 4786415
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgt 388  Q
    |||||||| || ||| | ||||||| ||||||||| | |||||||||||||||||||||||    
T  4786355 attacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgtcgtgt 4786415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 8017577 - 8017493
Alignment:
Q  279 tttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    ||||||||||||| |   |||||||||| ||||  |||||| | |||||||||||||||| ||| ||||||| ||| ||||||||    
T  8017577 tttcggtgtcagataggtgtcggtgtccaacactgacacgacatctatgattacactcaattatgtcattttttcatattattat 8017493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 12559114 - 12559157
Alignment:
Q  319 atacctatgattacactcaaatatatcattttctcaaattatta 362  Q
    |||| |||||||||||| || |||||||||||||||||||||||    
T  12559114 atacatatgattacactgaattatatcattttctcaaattatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 384
Target Start/End: Original strand, 36450789 - 36450827
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  36450789 attttttcaaattattagttgtgtcggcgtgtcagtgtc 36450827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 18130531 - 18130600
Alignment:
Q  310 accaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtca 379  Q
    ||||||| || |||| || ||||||| || | |||||||||||||| ||||||| |||||||| ||||||    
T  18130531 accaacatgacacctctggttacacttaattgtatcattttctcaacttattatctgtgtcggtgtgtca 18130600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 372
Target Start/End: Original strand, 13009490 - 13009554
Alignment:
Q  308 acaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 372  Q
    ||||| |||||| || |||||||||||| || |||||  |||||||||||||||||  |||||||    
T  13009490 acaccgacacgacacttatgattacactaaattatattgttttctcaaattattatccgtgtcgg 13009554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 20873111 - 20873055
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| |||||||||||| | ||||||||||||||||||    
T  20873111 attacactaaattatgtgattttttcaaattattatctatgtcggcgtgtcagtgtc 20873055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 306 - 384
Target Start/End: Original strand, 225263 - 225341
Alignment:
Q  306 cgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||||||||| || ||| |||||| |  | ||| |||||||||||||||||||| ||||||||||||||||||||    
T  225263 cgacaccaacacgacacttataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtc 225341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 384
Target Start/End: Original strand, 8047 - 8126
Alignment:
Q  305 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||| ||| |||||||||||||| ||||||| || ||| ||||||||||||||||||||  || ||| |||||| |||||    
T  8047 ccgaaaccgacacgatacctatgtttacactgaattatgtcattttctcaaattattatccgtatcgacgtgtcggtgtc 8126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 13424 - 13386
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  13424 attttctcaaattattagttgtgtcggcgtgtcagtgtc 13386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 384
Target Start/End: Original strand, 21903 - 21941
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  21903 attttctcaaattattagttgtgtcggcgtgtcagtgtc 21941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 2005 - 1956
Alignment:
Q  314 acacgatacctatgattacactcaaatatatcattttctcaaattattat 363  Q
    |||||| ||||||||||||||| |||||| |||||||| |||||||||||    
T  2005 acacgacacctatgattacactaaaatatgtcattttcacaaattattat 1956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 373
Target Start/End: Complemental strand, 4477 - 4403
Alignment:
Q  299 cggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggc 373  Q
    ||||||||||||| | ||||| | ||||||| ||||| || |||||||| |||| |||||||||| ||| |||||    
T  4477 cggtgtccgacactagcacgacatctatgatgacactgaattatatcatattcttaaattattatctgtttcggc 4403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 35715 - 35677
Alignment:
Q  271 taggtgtgtttcggtgtcagacactcgtcggtgtccgac 309  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  35715 taggtgtgtttcggtgtcagacacgcgttggtgtccgac 35677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 389
Target Start/End: Complemental strand, 71746 - 71704
Alignment:
Q  347 ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    |||| |||||||||||  |||||||||||||||||||||||||    
T  71746 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 71704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 384
Target Start/End: Original strand, 178854 - 178892
Alignment:
Q  346 attttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  178854 attttttcaaattattagttgtgtcggcgtgtcagtgtc 178892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 8040 - 7991
Alignment:
Q  340 tatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 389  Q
    ||||| ||||| ||||||||||| ||||||||||||||| || |||||||    
T  8040 tatatgattttttcaaattattagttgtgtcggcgtgtctgtatcgtgtc 7991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 51853 - 51797
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  51853 attacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 51797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 8840 - 8784
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| ||  |||| ||||| |||||||||||  ||||||||||||||||||||    
T  8840 attacactaaataatatgattttttcaaattattagctgtgtcggcgtgtcagtgtc 8784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 56968 - 56932
Alignment:
Q  324 tatgattacactcaaatatatcattttctcaaattat 360  Q
    |||||||||||| || |||||||||||||||||||||    
T  56968 tatgattacactgaattatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 90885 - 90829
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||||| ||||||||||||||||| | |||| || |||||||||||    
T  90885 attacactgaattatatgattttctcaaattattaatggtgttggtgtgtcagtgtc 90829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 92849 - 92793
Alignment:
Q  328 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 384  Q
    |||||||| || ||| | |||||||||||||||||   |||||||||||||||||||    
T  92849 attacactgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtc 92793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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