View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18300_low_8 (Length: 350)
Name: NF18300_low_8
Description: NF18300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18300_low_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 161 - 350
Target Start/End: Original strand, 32078858 - 32079047
Alignment:
| Q |
161 |
attaaaaatctaaaccttgaagtaattaataaggaacttaacagataacactatgttatttccatatgtcttacatatttatgtctttgtttgaagtgta |
260 |
Q |
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| T |
32078858 |
attaaaaatctaaaccttgaagtaattaataaggaacttaacagttaacactatgttatttccatatgtcttacatatttatgtctttgtttgaagtgta |
32078957 |
T |
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| Q |
261 |
ttctagttgtaagaagcagattctggttttggttgtaactgcatatttaacataattgagattgcttagagatgaaggaacaactgattc |
350 |
Q |
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| T |
32078958 |
ttctagttgtaagaagcagattctggttttggttgtaactgcatatttaacataattgagattgcttagagatgaaggaacaactgattc |
32079047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 32078308 - 32078468
Alignment:
| Q |
9 |
agatgaacaaatatcgttgtgttttttcttttcttccaactaaattaatttgtcttgttgtacctccaaaatatg-nnnnnnnnnnnnncaaggtttgaa |
107 |
Q |
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| T |
32078308 |
agatggacaaataccgttgtgttttttcttttcttccaactaaattaatttgtcttgttgtacctccaaaatatgtttttttttttgttcaaggtttgaa |
32078407 |
T |
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| Q |
108 |
tctcggaccttacatgtataaagcagtccttaccaactgagctaagttaatttattaaaaa |
168 |
Q |
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| T |
32078408 |
tctcggaccttacatgtataaagcagttcttaccaactgaactaagttaatttattaaaaa |
32078468 |
T |
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