View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_high_11 (Length: 460)
Name: NF18301_high_11
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 98 - 447
Target Start/End: Original strand, 31726636 - 31726985
Alignment:
| Q |
98 |
tcgagctcccactttctgttccaaagttggcactgcgtcgcaaggaagttcttgagttcgacatatatcataattccaaacacacactaggaaatcttat |
197 |
Q |
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| T |
31726636 |
tcgagctcccactttttgttccaaagttggcactgtgtcgcaaggaagttcttgagttcgacatatatcataattccaaacacacactaggaaatattat |
31726735 |
T |
|
| Q |
198 |
ccctctaaacaacaataatcatctcaactcatcatcaccactaagaaatcattatttttctagaaggnnnnnnnnnnnnnnntctccttcaccttctata |
297 |
Q |
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| T |
31726736 |
ccctctaaacaacaataatcatctcaactcatcatcaccactaagaaatcattatttttctagaagaaaaaaaatatatatatctccttcaccttctata |
31726835 |
T |
|
| Q |
298 |
atgatctcaactatatggaattgggttgtaatcattattatgttaaaaatcatcaagtgtacttccttgtaagagattgaagaccaacaacatttcttca |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31726836 |
atgatctcaactatatggaattgggttgtaatcattattatgttaaaaatcatcaagtgtacttccttgtaagagattgaagaccaacaacatttcttca |
31726935 |
T |
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| Q |
398 |
ttgccatcgtgttaggaaagaaagatcggatggtgatgggatcacaatct |
447 |
Q |
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| T |
31726936 |
ttgccatcgtgttaggaaagaaagatcggatggtgatgggatcacaatct |
31726985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 31726506 - 31726553
Alignment:
| Q |
17 |
acattcaagtttaacatcattgagtctatattacttactagtacttat |
64 |
Q |
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| T |
31726506 |
acattcaagtttaacatcattgagtctatattacttactagtacttat |
31726553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 39082302 - 39082346
Alignment:
| Q |
401 |
ccatcgtgttaggaaagaaagatcggatggtgatgggatcacaat |
445 |
Q |
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| T |
39082302 |
ccatcgtgttaggaaagaaagatcggatggtgatgggattacaat |
39082346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 31726497 - 31726525
Alignment:
| Q |
70 |
ttaacacatacattcaagtttaacatcat |
98 |
Q |
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| T |
31726497 |
ttaacacatacattcaagtttaacatcat |
31726525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 34522974 - 34523012
Alignment:
| Q |
364 |
ttgtaagagattgaagaccaacaacatttcttcattgcc |
402 |
Q |
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| T |
34522974 |
ttgtaagagattgaagactaataacatttcttcattgcc |
34523012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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