View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18301_high_14 (Length: 414)
Name: NF18301_high_14
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 6566784 - 6567164
Alignment:
| Q |
1 |
actgatttgtctaccatggtttctgctctctctcaagtcattggaacatcatctaccaatcataacaataacccacacatggcacaatcaatctcaacta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
6566784 |
actgatttgtctaccatggtttctgctctctctcaagtcattggaacatcatctaccaatcataa---taacccacaaatggcacaatcaatctcaacta |
6566880 |
T |
|
| Q |
101 |
ctatggtcaatgaagaatctcaatcacctcaacctcttctagatcaaggtttgtttctaaaattgcatgtttgcttcttgtgttcatctaaatttagcat |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
6566881 |
ctatggtcaatgaagaatctcaaccacctcaacctcttctagatcaaggtttgtttctaaaattgtatgtttgtttcttgtgttcatctaaatttagcat |
6566980 |
T |
|
| Q |
201 |
atgtttaattaattttctaaatgggacaactttatgctattcttggagcttgtccattttt--ggaaaaattggaacaactttctttaacctaatttccc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6566981 |
atgtttaattaattttctaaatgggacaactttatgctattgttggagcttgtccatttttggggaaaaattggaacaactttttttaacctaatttccc |
6567080 |
T |
|
| Q |
299 |
-----nnnnnnnnttgatgtaaaccctttaaaagtagtcatgataagctagaacttagtcatgaggtaaataaaatttaatcaa |
377 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||| || ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
6567081 |
aaaaaaaaaaaaaatggtgtgaaccctttaaaaatagtcatgataatctggaatttagtcatgaggtaaataagatttaatcaa |
6567164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 6580875 - 6581282
Alignment:
| Q |
1 |
actgatttgtctaccatggtttctgctctctctcaagtcattggaacatcatctaccaatcataacaataacccacacatggcacaatcaatctcaacta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
6580875 |
actgatttgtctaccatggtttctgctctctctcaagtcattggaacatcatctaccaatcataa---taacccacacatggcacaatcaacctcaacta |
6580971 |
T |
|
| Q |
101 |
ctatggtcaatgaagaatctcaatcacctcaacctcttctagatcaaggtttgtttctaaaattgcatgtttgcttcttgtgttcatctaaatttagcat |
200 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
6580972 |
ctatggtcaatgaagattctcaacaacctcaacctcttatagatcaaggtttgtttctaaaattgtatgtttgtttcttgtgttcgtctaaatttagcat |
6581071 |
T |
|
| Q |
201 |
atg-------tttaattaattttctaaatgggacaactttatgctattcttggagcttgtccattttt--ggaaaaattggaacaactttctttaaccta |
291 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
6581072 |
atgtttagactttagttaattttctaaatgggacaactttatgctattgttggagcttgtccatttttggggaaaaattggaacaactttttttaaccta |
6581171 |
T |
|
| Q |
292 |
atttccc-nnnnnnnnttgatgtaaaccctttaaaagtagtcatgataagctagaacttagtcatgaggtaaataaaatttaatcaatgattgttttgat |
390 |
Q |
| |
|
||||||| ||| | | |||||||||||| |||||||||||| || ||| |||||||||||||| |||| ||||||| ||| ||| ||| ||| |
|
|
| T |
6581172 |
atttcccaaaaaaaatttggtatgaaccctttaaaaatagtcatgataatctggaatttagtcatgaggtacataagatttaatgaattattatttcgat |
6581271 |
T |
|
| Q |
391 |
catgtttcaaa |
401 |
Q |
| |
|
|||| |||||| |
|
|
| T |
6581272 |
catgattcaaa |
6581282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University