View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18301_high_15 (Length: 413)

Name: NF18301_high_15
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18301_high_15
NF18301_high_15
[»] chr8 (15 HSPs)
chr8 (104-395)||(27067053-27067344)
chr8 (26-102)||(27067412-27067488)
chr8 (263-392)||(27080740-27080869)
chr8 (307-394)||(27053865-27053952)
chr8 (98-217)||(22651983-22652106)
chr8 (97-174)||(29447084-29447163)
chr8 (98-180)||(21465419-21465503)
chr8 (98-174)||(2572030-2572108)
chr8 (109-174)||(26902149-26902216)
chr8 (97-168)||(15816109-15816182)
chr8 (99-145)||(18170485-18170533)
chr8 (99-145)||(18634053-18634101)
chr8 (103-145)||(24669445-24669489)
chr8 (103-145)||(40332203-40332247)
chr8 (98-151)||(25566848-25566903)
[»] chr5 (11 HSPs)
chr5 (98-183)||(19579708-19579795)
chr5 (104-217)||(41091186-41091303)
chr5 (98-179)||(3966510-3966593)
chr5 (98-171)||(39698548-39698623)
chr5 (126-183)||(21542067-21542124)
chr5 (98-174)||(21522757-21522835)
chr5 (98-174)||(21533323-21533401)
chr5 (103-141)||(6326304-6326344)
chr5 (103-181)||(30098338-30098418)
chr5 (126-174)||(6401535-6401583)
chr5 (99-168)||(30080481-30080552)
[»] chr4 (3 HSPs)
chr4 (98-183)||(847958-848045)
chr4 (97-174)||(24613675-24613754)
chr4 (104-183)||(30982843-30982924)
[»] scaffold0044 (1 HSPs)
scaffold0044 (103-183)||(53192-53274)
[»] chr7 (5 HSPs)
chr7 (96-151)||(27945046-27945103)
chr7 (98-168)||(24339649-24339721)
chr7 (98-145)||(21880159-21880208)
chr7 (98-145)||(28155577-28155626)
chr7 (99-164)||(1885581-1885648)
[»] chr1 (9 HSPs)
chr1 (103-174)||(6612145-6612218)
chr1 (128-174)||(21032245-21032291)
chr1 (103-217)||(25361898-25362012)
chr1 (103-168)||(44482242-44482309)
chr1 (111-168)||(47989517-47989576)
chr1 (98-145)||(41877473-41877522)
chr1 (97-151)||(24577183-24577239)
chr1 (111-168)||(30173742-30173801)
chr1 (98-143)||(31015050-31015097)
[»] chr6 (11 HSPs)
chr6 (98-183)||(16766704-16766791)
chr6 (98-164)||(21395292-21395359)
chr6 (97-183)||(31384926-31385013)
chr6 (97-174)||(8365493-8365572)
chr6 (98-183)||(9107335-9107422)
chr6 (98-174)||(9195728-9195806)
chr6 (98-145)||(7977833-7977882)
chr6 (97-151)||(10770671-10770727)
chr6 (103-168)||(5970088-5970155)
chr6 (126-174)||(10294144-10294192)
chr6 (98-151)||(12696331-12696386)
[»] chr3 (13 HSPs)
chr3 (103-186)||(15796256-15796341)
chr3 (98-183)||(4987256-4987343)
chr3 (126-223)||(34185046-34185145)
chr3 (97-173)||(14209119-14209197)
chr3 (126-173)||(14216929-14216976)
chr3 (126-173)||(14223058-14223105)
chr3 (105-143)||(4990972-4991012)
chr3 (97-174)||(750592-750671)
chr3 (98-163)||(8039820-8039887)
chr3 (98-151)||(9800047-9800102)
chr3 (98-183)||(14832106-14832193)
chr3 (126-174)||(41961624-41961672)
chr3 (98-151)||(49651783-49651838)
[»] scaffold0018 (1 HSPs)
scaffold0018 (103-147)||(192250-192296)
[»] chr2 (3 HSPs)
chr2 (98-174)||(44860327-44860405)
chr2 (105-168)||(11223843-11223908)
chr2 (98-173)||(30717505-30717582)
[»] scaffold0049 (1 HSPs)
scaffold0049 (98-145)||(63780-63829)
[»] scaffold0004 (1 HSPs)
scaffold0004 (98-141)||(92814-92859)
[»] scaffold0136 (1 HSPs)
scaffold0136 (111-168)||(3829-3888)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 104 - 395
Target Start/End: Complemental strand, 27067344 - 27067053
Alignment:
Q  104 atttgagaaaattacataattctgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccggaacgtctaatctgaatagtg 203  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||  ||||||||||||||||||||| ||||||||||||||||||| ||  ||||    
T  27067344 atttgagaaaattacataattctgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacatgtgtcgaacaccggaacgtctaatccgaggagtg 27067245  T
Q  204 tatgtgcttcatagttgatgtctcttttattattattctaattagttatgtttatgaataatgcaggttggtttagctataaatcatgaaaaagagaaga 303  Q
    |  ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27067244 tccgtgcttcatagttgatgtctcttttattattattctaattgtttatgtttatgaataatgcaggttggtttagctataaatcatgaaaaagagaaga 27067145  T
Q  304 accaaaacccattcactccaaaagcttatgtaattcgttattgggatagagtgatcaaaaacaacttaccaaaaccatctttcatcctctct 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27067144 accaaaacccattcactccaaaagcttatgtaattcgttattgggatagagtgatcaaaaacaacttaccaaaaccatctttcatcctctct 27067053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 27067488 - 27067412
Alignment:
Q  26 cttcatttcatcactattttgttgtccaataattaattgttgcataaatactttaaatgttagtatcttacactaaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27067488 cttcatttcatcactattttgttgtccaataattaattgttgcataaatactttaaatgatagtatcttacactaaa 27067412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 263 - 392
Target Start/End: Complemental strand, 27080869 - 27080740
Alignment:
Q  263 aatgcaggttggtttagctataaatcatgaaaaagagaagaaccaaaacccattcactccaaaagcttatgtaattcgttattgggatagagtgatcaaa 362  Q
    ||||||||||||||||||  |  |||||| |  ||| || |||||||||||||||||| | ||||||| || ||||||||||||||| ||||||||||||    
T  27080869 aatgcaggttggtttagcagtggatcatgcaggagacaaaaaccaaaacccattcactgcgaaagcttttgcaattcgttattgggacagagtgatcaaa 27080770  T
Q  363 aacaacttaccaaaaccatctttcatcctc 392  Q
    ||||| |||||||||||| | |||||||||    
T  27080769 aacaagttaccaaaaccaacattcatcctc 27080740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 307 - 394
Target Start/End: Complemental strand, 27053952 - 27053865
Alignment:
Q  307 aaaacccattcactccaaaagcttatgtaattcgttattgggatagagtgatcaaaaacaacttaccaaaaccatctttcatcctctc 394  Q
    ||||| ||||||||||||| || |||| |||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  27053952 aaaactcattcactccaaaggcgtatgcaattcggtattgggacagagtgatcaaaaacaacttgccaaaaccatccttcatcctctc 27053865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 22651983 - 22652106
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg--aacgtctaat 193  Q
    |||| ||||||| ||||| |||||||||  | |||||||||||||||||| |||||  |||||||||||||||||||||  |||||||   |||||||||    
T  22651983 ctaataatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaat 22652082  T
Q  194 ctgaatagtgtatgtgcttcatag 217  Q
    | ||  |||||  |||||||||||    
T  22652083 ccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 29447163 - 29447084
Alignment:
Q  97 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    ||||| ||||||||||||| |||||||||  ||||| |||||||||||||| | |||  |||||||||||||||||||||    
T  29447163 actaataatttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcggtgtcggacacgacatgtgtc 29447084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 21465419 - 21465503
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacac 180  Q
    |||| ||||||| ||||| | |||||||  ||||||||||||||| |||| ||||| |||||||||||||||| ||||| |||||    
T  21465419 ctaataatttgaaaaaatcatataattcgatgtaattacaagtgttggtgtcgtgtcagtgtcggacacgacacgtgtccaacac 21465503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 2572108 - 2572030
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    |||| ||||||| ||||| ||||||||   |||||||||||||||||||| |||||  ||||||||||||||| |||||    
T  2572108 ctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggacacgacacgtgtc 2572030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 26902216 - 26902149
Alignment:
Q  109 agaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    ||||||| |||||||||  |||||||| | ||||||||| ||| |||||||||||||||||| |||||    
T  26902216 agaaaatcacataattcagtgtaattatatgtgtcggtgtcgtatgagtgtcggacacgacacgtgtc 26902149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 15816182 - 15816109
Alignment:
Q  97 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 168  Q
    ||||| ||||||| ||||| ||||||||   |||||||| ||||||||||| |||||  |||||||||||||||    
T  15816182 actaataatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggacacgaca 15816109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 18170533 - 18170485
Alignment:
Q  99 taaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 145  Q
    ||||||||||| |||||||||||||||  ||||||||||| ||||||||    
T  18170533 taaaaatttgaaaaaattacataattcaatgtaattacaaatgtcggtg 18170485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 18634101 - 18634053
Alignment:
Q  99 taaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 145  Q
    ||||||||||| |||||||||||||||  ||||||||||| ||||||||    
T  18634101 taaaaatttgaaaaaattacataattcaatgtaattacaaatgtcggtg 18634053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 24669445 - 24669489
Alignment:
Q  103 aatttgagaaaattacataattc--tgtaattacaagtgtcggtg 145  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||    
T  24669445 aatttgaggaaattacataattcagtgtaattacaagtgtcggtg 24669489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 40332203 - 40332247
Alignment:
Q  103 aatttgagaaaattacataattc--tgtaattacaagtgtcggtg 145  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||    
T  40332203 aatttgagaaaatcacataattcagtgtaattacaagtgtcggtg 40332247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 25566848 - 25566903
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 151  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||    
T  25566848 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 25566903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 19579708 - 19579795
Alignment:
Q  98 ctaaaaatttgagaaaattacataattctgt--aattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 183  Q
    |||| ||||||||||||| ||||||||  ||  ||||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||    
T  19579708 ctaataatttgagaaaatcacataatttagtgcaattacaagtgtcggtgtcgtgtcagtgtcggacacgacatatgtctaacaccgg 19579795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 41091303 - 41091186
Alignment:
Q  104 atttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacacc--ggaacgtctaatctgaat 199  Q
    |||||||||||| |||||||||  |||||||| | |||||| || ||||| | |||||||| ||||||||||| ||||||  || |||||||||||||      
T  41091303 atttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcaatgtcggacgcgacatgtgtctaacaccaaggcacgtctaatctgagg 41091204  T
Q  200 agtgtatgtgcttcatag 217  Q
    |||||  |||||||||||    
T  41091203 agtgttcgtgcttcatag 41091186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 3966510 - 3966593
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaaca 179  Q
    |||| ||||||||||||| ||| |||||  |||||||| | ||||||||| ||||| |||||||||||| ||||||||| ||||    
T  3966510 ctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacacaacatgtgtccaaca 3966593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 39698548 - 39698623
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgt 171  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||| ||| |||||  ||||||||||||||||||    
T  39698548 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacatgt 39698623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 21542067 - 21542124
Alignment:
Q  126 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 183  Q
    |||||||||||||||||||| |||||  ||||||||||||||| |||||  |||||||    
T  21542067 tgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacaccgg 21542124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 21522757 - 21522835
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    |||| ||||| | ||||| |||||||||  ||||||||||| |||||||| |||||  ||||||||||||||| |||||    
T  21522757 ctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtc 21522835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 21533323 - 21533401
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    |||| ||||| | ||||| |||||||||  ||||||||||| |||||||| |||||  ||||||||||||||| |||||    
T  21533323 ctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtc 21533401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 6326344 - 6326304
Alignment:
Q  103 aatttgagaaaattacataattc--tgtaattacaagtgtc 141  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  6326344 aatttgagaaaattacataattcagtgtaattacaagtgtc 6326304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 30098338 - 30098418
Alignment:
Q  103 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacacc 181  Q
    ||||||||||||| |||||||||  |||||||| |  |||||||  || || |||||||||||||||| |||||| |||||    
T  30098338 aatttgagaaaatcacataattcaatgtaattatagatgtcggtatcgagtcagtgtcggacacgacacgtgtcagacacc 30098418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 6401535 - 6401583
Alignment:
Q  126 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    |||||||| | ||||||||| ||||| |||||||||||||||| |||||    
T  6401535 tgtaattatatgtgtcggtgtcgtgtcagtgtcggacacgacacgtgtc 6401583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 30080552 - 30080481
Alignment:
Q  99 taaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 168  Q
    ||||| ||||||||||| |||||||||  |||||| |||||| ||||||  |||| ||||||||||| ||||    
T  30080552 taaaattttgagaaaatgacataattcaatgtaatcacaagtatcggtgtggtgttagtgtcggacatgaca 30080481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 847958 - 848045
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 183  Q
    |||| |||||||||||||||||||||||  | |||||||||||||||||| | |||  ||||||||||||| | ||||| ||||||||    
T  847958 ctaataatttgagaaaattacataattcactataattacaagtgtcggtgtcttgttggtgtcggacacgaaacgtgtcgaacaccgg 848045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 24613754 - 24613675
Alignment:
Q  97 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    ||||| ||||||||||||| |||||||||  ||||| |||||||||||||| | |||  ||||| ||||||||| |||||    
T  24613754 actaataatttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtcagacacgacacgtgtc 24613675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 30982924 - 30982843
Alignment:
Q  104 atttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 183  Q
    |||||||||||| ||||| |||  |||||||| ||||||||||| |||||  ||||| ||||||||| |||||  |||||||    
T  30982924 atttgagaaaatcacatatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgg 30982843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 53192 - 53274
Alignment:
Q  103 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 183  Q
    ||||||||||||| |||||||||  |||||||| |||||||||||||||||  |||||||||| |||| |||||  |||||||    
T  53192 aatttgagaaaatcacataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatgacacgtgtccgacaccgg 53274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 27945046 - 27945103
Alignment:
Q  96 cactaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 151  Q
    |||||| |||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  27945046 cactaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcgtgt 27945103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 24339649 - 24339721
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 168  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||  |||||||||||||||    
T  24339649 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgaca 24339721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 21880159 - 21880208
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 145  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  21880159 ctaataatttgagaaaattacataattcagtgtaattacaagtgtcggtg 21880208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 28155577 - 28155626
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 145  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  28155577 ctaataatttgagaaaattacataattcggtgtaattacaagtgtcggtg 28155626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 1885581 - 1885648
Alignment:
Q  99 taaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacac 164  Q
    ||||| ||||| ||||| |||||||||  |||||| ||||||||||||| |||||  |||||||||||    
T  1885581 taaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 1885648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 6612218 - 6612145
Alignment:
Q  103 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    ||||||| |||||||||||||||  |||||||||||||||||||| |||||   |||||||||||| |||||||    
T  6612218 aatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtcgatgtcggacacgatatgtgtc 6612145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 21032245 - 21032291
Alignment:
Q  128 taattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    ||||||||| |||||||| |||||| |||||||||||||||||||||    
T  21032245 taattacaaatgtcggtgtcgtgtgggtgtcggacacgacatgtgtc 21032291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 25361898 - 25362012
Alignment:
Q  103 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccggaacgtctaatctgaata 200  Q
    ||||||||||||| |||||||||  |||||||| | ||||| ||| |||||  |||||||||||||||  ||||  ||||||||||  |||||| ||| |    
T  25361898 aatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggacacgaca--tgtccgacaccggaacacctaatccgaaga 25361995  T
Q  201 gtgtatgtgcttcatag 217  Q
    ||||  |||||||||||    
T  25361996 gtgtccgtgcttcatag 25362012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 44482242 - 44482309
Alignment:
Q  103 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 168  Q
    ||||||||||||| |||||||||  |||||||| | ||||||||| |||||  |||||||||||||||    
T  44482242 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgaca 44482309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 47989517 - 47989576
Alignment:
Q  111 aaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 168  Q
    ||||| |||||||||  |||||||||||||||||||| |||||  |||||||||||||||    
T  47989517 aaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgaca 47989576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 41877522 - 41877473
Alignment:
Q  98 ctaaaaatttgagaaaattacataatt--ctgtaattacaagtgtcggtg 145  Q
    |||| ||||||||||||||||||||||   ||||||||||||||||||||    
T  41877522 ctaataatttgagaaaattacataatttagtgtaattacaagtgtcggtg 41877473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 24577239 - 24577183
Alignment:
Q  97 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 151  Q
    ||||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||    
T  24577239 actaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 24577183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 30173801 - 30173742
Alignment:
Q  111 aaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 168  Q
    |||||||||||| ||  |||||||||||||||||||| |||||  || ||||||||||||    
T  30173801 aaaattacataactcagtgtaattacaagtgtcggtgtcgtgtccgtatcggacacgaca 30173742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 31015050 - 31015097
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcgg 143  Q
    |||| ||||||||||||| |||||||||  ||||||||||||||||||    
T  31015050 ctaataatttgagaaaatcacataattcagtgtaattacaagtgtcgg 31015097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 16766704 - 16766791
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 183  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||  ||||||||||| ||| |||||  |||||||    
T  16766704 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgg 16766791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 21395359 - 21395292
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacac 164  Q
    |||| ||||||||||||| ||||||||   |||||||||||||||||||| ||||| ||||||||||||    
T  21395359 ctaataatttgagaaaat-acataatttagtgtaattacaagtgtcggtgtcgtgtcagtgtcggacac 21395292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 31384926 - 31385013
Alignment:
Q  97 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 183  Q
    ||||| ||||||| ||||| |||||||||  |||||||||||||||| ||| ||||| ||||| |||||||||| |||||  |||||||    
T  31384926 actaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgt-agtgttggacacgacacgtgtcctacaccgg 31385013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 8365572 - 8365493
Alignment:
Q  97 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    ||||| ||||||| || || |||||||||  |||||||||||||||||||| |||||  || |||||||||||| |||||    
T  8365572 actaataatttgaaaatatcacataattcggtgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtc 8365493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 9107422 - 9107335
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 183  Q
    |||| ||||||| ||||| ||| |||||  |||||||||||||||||||| |||||  ||||||||||| || ||||||  |||||||    
T  9107422 ctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacgtgtgtccgacaccgg 9107335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 9195806 - 9195728
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    |||| ||||||||||||| ||||||||   |||||||| | ||||||||| |||||  ||||| |||||||||||||||    
T  9195806 ctaataatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtgtaggtgtctgacacgacatgtgtc 9195728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 7977882 - 7977833
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 145  Q
    |||| ||||||| |||||||||||||||  ||||||||||||||||||||    
T  7977882 ctaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtg 7977833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 10770727 - 10770671
Alignment:
Q  97 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 151  Q
    ||||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||    
T  10770727 actaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 10770671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 5970155 - 5970088
Alignment:
Q  103 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 168  Q
    ||||||| ||||| |||||||||  ||||||||||| ||| |||| |||||  |||||||||||||||    
T  5970155 aatttgaaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtcggacacgaca 5970088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 10294144 - 10294192
Alignment:
Q  126 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    |||||||| | ||||||||| |||||  |||||||||||||||||||||    
T  10294144 tgtaattatatgtgtcggtgtcgtgttggtgtcggacacgacatgtgtc 10294192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 12696331 - 12696386
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 151  Q
    |||| ||||||| |||||||||||||||  |||||||||||||||| ||| |||||    
T  12696331 ctaataatttgaaaaaattacataattcagtgtaattacaagtgtcagtgtcgtgt 12696386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 15796341 - 15796256
Alignment:
Q  103 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccggaac 186  Q
    ||||||| ||||| | |||||||  ||||||||||| |||||||| |||||  ||||||||||| ||| ||||| |||||||||||    
T  15796341 aatttgaaaaaatcatataattcagtgtaattacaattgtcggtgtcgtgtaggtgtcggacacaacacgtgtccaacaccggaac 15796256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 4987343 - 4987256
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 183  Q
    |||| ||||||| ||||| |||||||||  ||||||||||||||| |||| |||||  |||| |||||||||| |||||  |||||||    
T  4987343 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgacgtgtcggtgttggacacgacacgtgtccgacaccgg 4987256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 34185145 - 34185046
Alignment:
Q  126 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg--aacgtctaatctgaatagtgtatgtgcttcatagttgatg 223  Q
    |||||||||||||||||||| |||||   ||||||||| ||||||||||  |||||||   ||| |||||| ||  |||||  |||||||||||||||||    
T  34185145 tgtaattacaagtgtcggtgtcgtgtccatgtcggacaagacatgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagttgatg 34185046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 14209119 - 14209197
Alignment:
Q  97 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgt 173  Q
    ||||| ||||| | ||||| |||||||||  |||||||||||||||| ||| |||||  ||||||||||||||| ||||    
T  14209119 actaataattttaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacacgtgt 14209197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 14216929 - 14216976
Alignment:
Q  126 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgt 173  Q
    |||||||||||||||| ||| ||||| |||||||||||||||| ||||    
T  14216929 tgtaattacaagtgtccgtgtcgtgttagtgtcggacacgacacgtgt 14216976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 14223058 - 14223105
Alignment:
Q  126 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgt 173  Q
    |||||||||||||||| ||| ||||| |||||||||||||||| ||||    
T  14223058 tgtaattacaagtgtccgtgtcgtgttagtgtcggacacgacacgtgt 14223105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 4991012 - 4990972
Alignment:
Q  105 tttgagaaaattacataattc--tgtaattacaagtgtcgg 143  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  4991012 tttgagaaaattacataattcagtgtaattacaagtgtcgg 4990972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 750671 - 750592
Alignment:
Q  97 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    ||||| ||||||| || || |||||||||  || ||||||||||||||||| |||||  || |||||||||||| |||||    
T  750671 actaataatttgaaaatatcacataattcgctgcaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtc 750592  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 8039887 - 8039820
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggaca 163  Q
    |||| ||||||||||||||| |||||||  |||||||| | ||||||||| |||||  ||||||||||    
T  8039887 ctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggaca 8039820  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 9800047 - 9800102
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 151  Q
    |||| |||||||||||||||||||||||  |||||||  ||||||||||| |||||    
T  9800047 ctaataatttgagaaaattacataattccgtgtaattgtaagtgtcggtgtcgtgt 9800102  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 14832106 - 14832193
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 183  Q
    |||| ||||||| ||||| |||||| ||  |||||||||||||||| ||| |||||  || |||||||||||| |||||  |||||||    
T  14832106 ctaataatttgaaaaaatcacataactcaatgtaattacaagtgtcagtgtcgtgtcggtatcggacacgacacgtgtccgacaccgg 14832193  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 41961672 - 41961624
Alignment:
Q  126 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    |||||||||||||||||||| |||||  || |||||||||||| |||||    
T  41961672 tgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtc 41961624  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 49651838 - 49651783
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 151  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||    
T  49651838 ctaataatttgaaaaaatcacataattcactgtaattacaagtgtcggtgtcgtgt 49651783  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 192296 - 192250
Alignment:
Q  103 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgcc 147  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  192296 aatttgagaaaattacataattcggtgtaattacaagtgtctgtgcc 192250  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 44860327 - 44860405
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 174  Q
    |||| |||||||||||||  ||||||||  |||||||| | ||||||||| |||||  |||| ||||||||||||||||    
T  44860327 ctaataatttgagaaaatcgcataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggacacgacatgtgtc 44860405  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 11223908 - 11223843
Alignment:
Q  105 tttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 168  Q
    ||||| ||||| |||||||||  |||||||||||||||||||| | |||  |||||||||||||||    
T  11223908 tttgaaaaaataacataattcagtgtaattacaagtgtcggtgtcatgtaggtgtcggacacgaca 11223843  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 30717582 - 30717505
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgt 173  Q
    |||| ||||||| ||||| |||||||||  ||||||||||||||||| || |||||   |||||||||||||| ||||    
T  30717582 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcgatgtcgtgtcgttgtcggacacgacacgtgt 30717505  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 63780 - 63829
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 145  Q
    |||| |||||||||||||||||||||||  || |||||||||||||||||    
T  63780 ctaataatttgagaaaattacataattcagtgcaattacaagtgtcggtg 63829  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 92814 - 92859
Alignment:
Q  98 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtc 141  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||    
T  92814 ctaataatttgagaaaattacataattcagtgtaattacaagtgtc 92859  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 3888 - 3829
Alignment:
Q  111 aaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 168  Q
    ||||| |||||||||  |||||||||||||||| ||| |||||  |||||||||||||||    
T  3888 aaaatcacataattcagtgtaattacaagtgtcagtgtcgtgttggtgtcggacacgaca 3829  T

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