View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_high_20 (Length: 357)
Name: NF18301_high_20
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_high_20 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 29541492 - 29541153
Alignment:
| Q |
18 |
tgatccctaccagagagcacaagctagattttgggctgactatgttgataagaaggtatataataagagtcttcaaattttannnnnnnngactcgtata |
117 |
Q |
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| T |
29541492 |
tgatccctaccagagagcacaagctagattttgggctgactatgttgataagaaggtatataataagagtcttcaaattttattttattttactcgtata |
29541393 |
T |
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| Q |
118 |
ttttctttatgtagatagacgaaaagacaaataatattggaacccacacacaccagtggagggatggggttcgaacgttgatcatggcgtctgatttacc |
217 |
Q |
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| T |
29541392 |
ttttctttctgtagatagacgaaaagacaaacaatattggaacccacacacacaagtggagggtcgggattcgaacgttgatcatggcgttcgatttacc |
29541293 |
T |
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| Q |
218 |
agttttgatatttttatcagtcgagttaggacttgtgaactgactcgaatattcaatcttgctaaactatgctttcatcaatctctattttaggttttgg |
317 |
Q |
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| T |
29541292 |
agttttgatatttttatcagttgagttaggacttgtgaactgactcgtatattcaatcttgctaaactatgctttcatcaatctctattttagattttgg |
29541193 |
T |
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| Q |
318 |
tgtggtccatccaatatttattatttgtttctttaatttt |
357 |
Q |
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| T |
29541192 |
tgtggtccatccaatatttattatctgtttctttaatttt |
29541153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 29511078 - 29511018
Alignment:
| Q |
18 |
tgatccctaccagagagcacaagctagattttgggctgactatgttgataagaaggtatat |
78 |
Q |
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| T |
29511078 |
tgatccttatcagagatcacaagctagattctgggctgattatgttgataagaaggtatat |
29511018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 29518196 - 29518136
Alignment:
| Q |
18 |
tgatccctaccagagagcacaagctagattttgggctgactatgttgataagaaggtatat |
78 |
Q |
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| T |
29518196 |
tgatccttatcagagatcacaagctagattctgggctgattatgttgataagaaggtatat |
29518136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 29507258 - 29507196
Alignment:
| Q |
18 |
tgatccctaccagagagcacaagctagattttgggctgactatgttgataagaaggtatataa |
80 |
Q |
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| T |
29507258 |
tgatccatatcagaaagcacaagctagattctgggctgattatattgataagaaggtatataa |
29507196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 29535332 - 29535270
Alignment:
| Q |
18 |
tgatccctaccagagagcacaagctagattttgggctgactatgttgataagaaggtatataa |
80 |
Q |
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| T |
29535332 |
tgatccttatcagagatcacaagctaggttctgggctgattatgttgataagaaggtatataa |
29535270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 29549093 - 29549036
Alignment:
| Q |
18 |
tgatccctaccagagagcacaagctagattttgggctgactatgttgataagaaggta |
75 |
Q |
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| T |
29549093 |
tgatccttatcagagatcacaagctttattttgggctgattatattgataagaaggta |
29549036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 51266337 - 51266291
Alignment:
| Q |
28 |
cagagagcacaagctagattttgggctgactatgttgataagaaggt |
74 |
Q |
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| T |
51266337 |
cagagagctcaagctagattttgggctgattttgttgataataaggt |
51266291 |
T |
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