View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18301_high_21 (Length: 349)

Name: NF18301_high_21
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18301_high_21
NF18301_high_21
[»] chr6 (1 HSPs)
chr6 (8-326)||(4916304-4916622)
[»] chr8 (10 HSPs)
chr8 (8-157)||(2929841-2929990)
chr8 (8-157)||(3012789-3012938)
chr8 (161-326)||(2930101-2930266)
chr8 (22-155)||(37795335-37795468)
chr8 (8-155)||(2946479-2946626)
chr8 (10-155)||(2920441-2920586)
chr8 (172-305)||(2946750-2946883)
chr8 (167-324)||(3012515-3012672)
chr8 (189-326)||(37795609-37795746)
chr8 (187-315)||(2920725-2920853)
[»] chr3 (2 HSPs)
chr3 (8-157)||(1507122-1507271)
chr3 (168-326)||(1506843-1507001)
[»] chr2 (2 HSPs)
chr2 (22-155)||(28024342-28024475)
chr2 (187-318)||(28024602-28024733)


Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 4916622 - 4916304
Alignment:
Q  8 gatcagagagagaatcaaggtgactggcaagcaaggagcaccccttctcaacttcactaaagacacctattgcattgagttctttctggaaagatgcaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  4916622 gatcagagagagaatcaaggtgactggcaagcaaggagcaccccttctcaacttcaccaatgacccctattgcattgagttctttctggaaagatgcaat 4916523  T
Q  108 tttaggtccataccaattctcatcaataaaaggtccatcagttggattcagaagcaagtttgtgatcttgcattagaactcggatgcatcccagaaaaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4916522 tttaggtccataccaattctcatcaataaaaggtccatcagttggattcagaagcaagtttgtgatcttgcattagaactcggatgcatcccagaaaaga 4916423  T
Q  208 aaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggacgcaaacttcactccatctttcaattgagtaacaacgccaaag 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4916422 aaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggacacaaacttcactccatctttcaattgagtaacaacgccaaag 4916323  T
Q  308 ctcttcagctctgccttgt 326  Q
    |||||||||||||||||||    
T  4916322 ctcttcagctctgccttgt 4916304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 2929841 - 2929990
Alignment:
Q  8 gatcagagagagaatcaaggtgactggcaagcaaggagcaccccttctcaacttcactaaagacacctattgcattgagttctttctggaaagatgcaat 107  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| || |||||||||||||||||| |||||||    
T  2929841 gatcagagagagtatcaaggtgactggcaagcaaggagcaccccttttcaacttcactaatgacccctatcgcgttgagttctttctggaaaaatgcaat 2929940  T
Q  108 tttaggtccataccaattctcatcaataaaaggtccatcagttggattca 157  Q
     || ||||||||  |||||||||| |||||||||||||||||||||||||    
T  2929941 atttggtccataaaaattctcatctataaaaggtccatcagttggattca 2929990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 3012938 - 3012789
Alignment:
Q  8 gatcagagagagaatcaaggtgactggcaagcaaggagcaccccttctcaacttcactaaagacacctattgcattgagttctttctggaaagatgcaat 107  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  ||| ||||||||||| |||||||||||||||  ||||||    
T  3012938 gatcagagagagagtcaaggtgactggcaagcaaggagcaacccttctcaacttcactagtgacccctattgcattcagttctttctggaaaattgcaat 3012839  T
Q  108 tttaggtccataccaattctcatcaataaaaggtccatcagttggattca 157  Q
    ||||||||||||  | ||||||||||||||||| ||||||||||||||||    
T  3012838 tttaggtccataaaatttctcatcaataaaaggcccatcagttggattca 3012789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 161 - 326
Target Start/End: Original strand, 2930101 - 2930266
Alignment:
Q  161 gcaagtttgtgatcttgcattagaactcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacatt 260  Q
    ||||| |||| |||||| ||||||| | |||||||| |||  |||||||||||||||| |||  |||| |||||||| ||||||||||| || |||||||    
T  2930101 gcaaggttgttatcttgtattagaagttggatgcattccaataaagaaaacacactttcaggactaatggtggagggatttgaaggaaaattcagacatt 2930200  T
Q  261 cggacgcaaacttcactccatctttcaattgagtaacaacgccaaagctcttcagctctgccttgt 326  Q
    | | | ||||| |||  || |||||||||| ||||||||| |||| ||||||||||||||||||||    
T  2930201 cagccacaaacctcaacccgtctttcaattcagtaacaacaccaatgctcttcagctctgccttgt 2930266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 37795335 - 37795468
Alignment:
Q  22 tcaaggtgactggcaagcaaggagcaccccttctcaacttcactaaagacacctattgcattgagttctttctggaaagatgcaattttaggtccatacc 121  Q
    |||||||||| ||||||||||||||| || ||||| |  ||| |   |||||| |||||||||| |||||||||||||||||| ||||||||||||||      
T  37795335 tcaaggtgaccggcaagcaaggagcatcctttctctaggtcagtggtgacaccgattgcattgaattctttctggaaagatgctattttaggtccataaa 37795434  T
Q  122 aattctcatcaataaaaggtccatcagttggatt 155  Q
    ||||  ||||||||||||| ||||||||||||||    
T  37795435 aatttgcatcaataaaaggcccatcagttggatt 37795468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 2946479 - 2946626
Alignment:
Q  8 gatcagagagagaatcaaggtgactggcaagcaaggagcaccccttctcaacttcactaaagacacctattgcattgagttctttctggaaagatgcaat 107  Q
    ||||||| || || ||||||||| |||||||||| |||||||| |||||||||||||||| ||| ||||| |||  ||||||||| ||| ||    ||||    
T  2946479 gatcagatagggactcaaggtgattggcaagcaaagagcaccctttctcaacttcactaatgacccctatggcagcgagttctttatggtaaaggacaat 2946578  T
Q  108 tttaggtccataccaattctcatcaataaaaggtccatcagttggatt 155  Q
    || |||||||||  || |||||||||||||||| |||| |||||||||    
T  2946579 ttcaggtccataaaaactctcatcaataaaaggcccattagttggatt 2946626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 2920441 - 2920586
Alignment:
Q  10 tcagagagagaatcaaggtgactggcaagcaaggagcaccccttctcaacttcactaaagacacctattgcattgagttctttctggaaagatgcaattt 109  Q
    |||||||||  || |||||| | || ||||||||||||||| ||||| | |||| ||  ||| |||||||||  ||||||||||||||||||||| || |    
T  2920441 tcagagagattatgaaggtgtccggaaagcaaggagcaccctttctctagttcaatagtgactcctattgcaccgagttctttctggaaagatgctatct 2920540  T
Q  110 taggtccataccaattctcatcaataaaaggtccatcagttggatt 155  Q
    ||  ||||||  |||| ||||||||||||||||| |||||||||||    
T  2920541 taattccataaaaattttcatcaataaaaggtccgtcagttggatt 2920586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 305
Target Start/End: Original strand, 2946750 - 2946883
Alignment:
Q  172 atcttgcattagaactcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggacgcaaac 271  Q
    |||||||||||||| |||||||||| |||  |||||| ||||||||| |||  |||||||||| || || |||||||| || ||| |||| |   ||||     
T  2946750 atcttgcattagaagtcggatgcattccatcaaagaacacacactttcaggagtaatagtggatggattggaaggaaaattcagagattcaggtacaaat 2946849  T
Q  272 ttcactccatctttcaattgagtaacaacgccaa 305  Q
     |||||||||||||||||| ||||||||| ||||    
T  2946850 gtcactccatctttcaattcagtaacaacaccaa 2946883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 324
Target Start/End: Complemental strand, 3012672 - 3012515
Alignment:
Q  167 ttgtgatcttgcattagaactcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggacg 266  Q
    |||| |||| ||||||||| | |||||| | |||| |||| ||||||||||| |||  ||||  ||||||| |||||||||||  | |||||||| | |     
T  3012672 ttgttatctagcattagaagttggatgctttccagcaaagcaaacacactttcaggactaatgatggagggatttgaaggaaacatcagacattcagcca 3012573  T
Q  267 caaacttcactccatctttcaattgagtaacaacgccaaagctcttcagctctgcctt 324  Q
    ||||  |||  || |||||||||| ||||||||| |||| ||||||||||||||||||    
T  3012572 caaaactcaacccgtctttcaattcagtaacaacaccaatgctcttcagctctgcctt 3012515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 326
Target Start/End: Original strand, 37795609 - 37795746
Alignment:
Q  189 ggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggacgcaaacttcactccatctttcaa 288  Q
    |||||||| |||| |||||||||||||||| |||  |||| |||||||| | ||||||||| || |||||||  | | ||||| |||| |||| ||||||    
T  37795609 ggatgcattccagcaaagaaaacacactttcaggagtaatggtggagggatctgaaggaaaattcagacatttaggcacaaacctcacaccatgtttcaa 37795708  T
Q  289 ttgagtaacaacgccaaagctcttcagctctgccttgt 326  Q
    || ||||||||| |||| | ||||||| ||| ||||||    
T  37795709 ttcagtaacaacaccaaggttcttcagttcttccttgt 37795746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 315
Target Start/End: Original strand, 2920725 - 2920853
Alignment:
Q  187 tcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggacgcaaacttcactccatctttc 286  Q
    ||||||||||  ||| |||||||||||||| | |||  |||| |||||||| | ||||||||| || | ||||   | | ||||| ||||||||| ||||    
T  2920725 tcggatgcatttcagcaaagaaaacacactgtcaggactaatggtggagggatctgaaggaaaattcaaacatgtaggcacaaacctcactccatttttc 2920824  T
Q  287 aattgagtaacaacgccaaagctcttcag 315  Q
    |||| ||||||||| |||| |||||||||    
T  2920825 aattcagtaacaacaccaatgctcttcag 2920853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 1507271 - 1507122
Alignment:
Q  8 gatcagagagagaatcaaggtgactggcaagcaaggagcaccccttctcaacttcactaaagacacctattgcattgagttctttctggaaagatgcaat 107  Q
    ||||||||||||| | ||||||   ||||||||| ||||||||||||||||||||||||  ||| |||||||||||||||||||||||| ||  ||||||    
T  1507271 gatcagagagagagttaaggtggtcggcaagcaaagagcaccccttctcaacttcactagtgacccctattgcattgagttctttctggtaaattgcaat 1507172  T
Q  108 tttaggtccataccaattctcatcaataaaaggtccatcagttggattca 157  Q
    ||||||||| ||  ||| |||||  |||||||| ||||| ||||||||||    
T  1507171 tttaggtccgtagaaatactcattgataaaaggcccatcggttggattca 1507122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 326
Target Start/End: Complemental strand, 1507001 - 1506843
Alignment:
Q  168 tgtgatcttgcattagaactcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggacgc 267  Q
    |||||| ||||||||||| | |||| ||| |||| |||||||||||||||| |||  |||| ||||| || || ||||||||  | | |||||| | |      
T  1507001 tgtgattttgcattagaagttggatccattccagcaaagaaaacacactttcaggagtaatggtggaaggattggaaggaaaactcaaacattcaggcaa 1506902  T
Q  268 aaacttcactccatctttcaattgagtaacaacgccaaagctcttcagctctgccttgt 326  Q
    |||| || ||||||||||||||| ||||||||| |||| ||||| ||||||| ||||||    
T  1506901 aaacctcgctccatctttcaattcagtaacaacaccaatgctctccagctcttccttgt 1506843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 28024342 - 28024475
Alignment:
Q  22 tcaaggtgactggcaagcaaggagcaccccttctcaacttcactaaagacacctattgcattgagttctttctggaaagatgcaattttaggtccatacc 121  Q
    |||||||||| ||| ||||||||||| || ||||| |  ||| |   ||||||||||||||||| |||||||||||||||||| ||| |||| |||||      
T  28024342 tcaaggtgaccggcgagcaaggagcatcctttctctaggtcagtggtgacacctattgcattgaattctttctggaaagatgctattgtaggaccataaa 28024441  T
Q  122 aattctcatcaataaaaggtccatcagttggatt 155  Q
    ||||  ||||||  ||||| ||||||||| ||||    
T  28024442 aatttgcatcaacgaaaggcccatcagtttgatt 28024475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 318
Target Start/End: Original strand, 28024602 - 28024733
Alignment:
Q  187 tcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggacgcaaacttcactccatctttc 286  Q
    |||||||||| |||| |||||||||||||||| |||  |||| |||| ||| | ||||||||| || |||||||| | | ||||  ||||||||| |||     
T  28024602 tcggatgcattccagcaaagaaaacacactttcaggagtaatggtggtgggatctgaaggaaaattcagacattcaggcacaaatctcactccatgtttg 28024701  T
Q  287 aattgagtaacaacgccaaagctcttcagctc 318  Q
     ||| ||||||||| |||  ||| ||||||||    
T  28024702 tattcagtaacaacaccagtgcttttcagctc 28024733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University