View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_high_22 (Length: 333)
Name: NF18301_high_22
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 32684900 - 32685191
Alignment:
| Q |
18 |
agaggtggggattggagaaagaggtaatagtgttaataattagtatgtgtttgtttgtttgtgaaagataaaagaaatattatgtgttggttattccctg |
117 |
Q |
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| T |
32684900 |
agaggtggggattggagaaagaggtaatagtgttaataattagtatgtgtttgtttgtttgtgaaagataaaagaaatattatgtgttggttattccctg |
32684999 |
T |
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| Q |
118 |
ggaaatattcatttattgaatatttacaaatatattccctctaaatcaaacgaaacattttcatctattgaattatcatccctcc-aaaaaaggaaatat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32685000 |
ggaaatattcatttattgaatatttacaaatatattccctctaaatcaaaggaaacattttcatctattgaattatcatccctccaaaaaaaggaaatat |
32685099 |
T |
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| Q |
217 |
caaagtatcatttcgaacttatgtgatcatgtctttcttttttgaccataaatgaacatatatatgaattacataagccatgaatgttgatggg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32685100 |
caaagtatcatttcgaacttatgtgatcatgtctttcttttttgatcataaatgaac--atatatgaattacataagccatgaatgttgatggg |
32685191 |
T |
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