View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_high_23 (Length: 313)
Name: NF18301_high_23
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 836270 - 836547
Alignment:
| Q |
20 |
gaaggctggaagtgttcaatccaaacctaatccagttttaaagactagacatggatcgtcgtttcacatcaaagacgagtaccctcagactttttatggt |
119 |
Q |
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| T |
836270 |
gaaggctggaagtgttcaatccaaacctaatccagttttaaagactagacatgaatcgtcgtttcacatcaaagacgagtaccctcagactttttatggt |
836369 |
T |
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| Q |
120 |
aacttcagaaaattgaagtaactttagaaaatcgaaggacagcgaattcgaacgcacagaaagacattaagtttaacagaattgtacgtgatatttacta |
219 |
Q |
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| T |
836370 |
aacttcag----------taactttagaaaattgaaggacagcgaattcgaacgcacagaaagacattaagtttaacagaattgtacgtgatatttacta |
836459 |
T |
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| Q |
220 |
ttttatgtcactttgttttttcgcaatcgtgcaatattgcacaggatctttactactttagaaaataccgcactatattcttcgacat |
307 |
Q |
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| T |
836460 |
ttttatgtcactttgttttttcgcaatcgtgcaatattgcacatgatctttactactttagtaaataccgcactatatttttagacat |
836547 |
T |
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