View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_high_24 (Length: 290)
Name: NF18301_high_24
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_high_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 48224004 - 48224284
Alignment:
| Q |
11 |
catataatatgacagatttctattagatgtttgtacctttataagttagttatgaggattttatatcctccttaattaacctaggtttgaactttgatgg |
110 |
Q |
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| T |
48224004 |
catataatatgacagatttctattagatgtttgtacatttataagttagttatgaggattttatatcctccttaattaacctaggtttgaactttgatgg |
48224103 |
T |
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| Q |
111 |
agagnnnnnnnn-ttataaaccttgtgttataaggtttcataataaaatttgttttaaacctctaaatatgttcgggtattcttaatttttaccttaatt |
209 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48224104 |
agagaaaaaaaaattataaaccttgtgttataaggtttcataataaaatttgttttaaacctctaaatatgttcgggtattcttaatttttaccttaatt |
48224203 |
T |
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| Q |
210 |
aatagtcattttgtgggcgaattgagttatatgacaactcaaattctaaattttcatgagagatatgtgtcaagaatctta |
290 |
Q |
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| T |
48224204 |
actagtcattttgtgggcgaattgagttatatgacaactcaaattctaaattttcatgagagatatgtgtcaagaatctta |
48224284 |
T |
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