View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_high_25 (Length: 268)
Name: NF18301_high_25
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 25664595 - 25664355
Alignment:
| Q |
12 |
catcataacaaaagttgtgttatttcatgagaaatatttatatatttaaaacaaacaaaatatgtagcgagttataatgaaaccttttttgcttttacac |
111 |
Q |
| |
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||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25664595 |
catcataacaaaaattgtgttatttcatgaggaagatttatatatttaaaacaaacaaaatatgtagggagttataatgaaaccttttttgcttttacac |
25664496 |
T |
|
| Q |
112 |
atgaatggctttagtttcttaaaccactcaaattgcacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatcttttcaa |
211 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25664495 |
atgaatggctttagtttcttaaaccactcaaattgcacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatctttttaa |
25664396 |
T |
|
| Q |
212 |
gtgcactagcacctgaaaatgcaaaatttactcctttcttc |
252 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
25664395 |
gtgcactagcacctgaaaatgcaaaatttactcctttcttc |
25664355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 25671000 - 25670760
Alignment:
| Q |
12 |
catcataacaaaagttgtgttatttcatgagaaatatttatatatttaaaacaaacaaaatatgtagcgagttataatgaaaccttttttgcttttacac |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25671000 |
catcataacaaaaattgtgttatttcatgaggaagatttatatatttaaaacaaacaaaatatgtagggagttataatgaaaccttttttgcttttacac |
25670901 |
T |
|
| Q |
112 |
atgaatggctttagtttcttaaaccactcaaattgcacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatcttttcaa |
211 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25670900 |
atgaatggctttagtttcttaaaccactcaaattgcacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatctttttaa |
25670801 |
T |
|
| Q |
212 |
gtgcactagcacctgaaaatgcaaaatttactcctttcttc |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25670800 |
gtgcactagcacctgaaaatgcaaaatttactcctttcttc |
25670760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 25677405 - 25677165
Alignment:
| Q |
12 |
catcataacaaaagttgtgttatttcatgagaaatatttatatatttaaaacaaacaaaatatgtagcgagttataatgaaaccttttttgcttttacac |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25677405 |
catcataacaaaaattgtgttatttcatgaggaagatttatatatttaaaacaaacaaaatatgtagggagttataatgaaaccttttttgcttttacac |
25677306 |
T |
|
| Q |
112 |
atgaatggctttagtttcttaaaccactcaaattgcacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatcttttcaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25677305 |
atgaatggctttagtttcttaaaccactcaaattgcacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatctttttaa |
25677206 |
T |
|
| Q |
212 |
gtgcactagcacctgaaaatgcaaaatttactcctttcttc |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25677205 |
gtgcactagcacctgaaaatgcaaaatttactcctttcttc |
25677165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 25684079 - 25683839
Alignment:
| Q |
12 |
catcataacaaaagttgtgttatttcatgagaaatatttatatatttaaaacaaacaaaatatgtagcgagttataatgaaaccttttttgcttttacac |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25684079 |
catcataacaaaaattgtgttatttcatgaggaagatttatatatttaaaacaaacaaaatatgtagggagttataatgaaaccttttttgcttttacac |
25683980 |
T |
|
| Q |
112 |
atgaatggctttagtttcttaaaccactcaaattgcacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatcttttcaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
25683979 |
atgaatggctttagtttcttaaaccactcaaattgcacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatctttttaa |
25683880 |
T |
|
| Q |
212 |
gtgcactagcacctgaaaatgcaaaatttactcctttcttc |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25683879 |
gtgcactagcacctgaaaatgcaaaatttactcctttcttc |
25683839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 25658190 - 25657950
Alignment:
| Q |
12 |
catcataacaaaagttgtgttatttcatgagaaatatttatatatttaaaacaaacaaaatatgtagcgagttataatgaaaccttttttgcttttacac |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
25658190 |
catcataacaaaaattgtgttatttcatgaggaagatttatatatttaaaacaaacaaaatatgtagggagttataatgaaaccttttttgcttttacac |
25658091 |
T |
|
| Q |
112 |
atgaatggctttagtttcttaaaccactcaaattgcacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatcttttcaa |
211 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25658090 |
atgaatgactttagtttcttaaaccactcaaattgtacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatcttttcaa |
25657991 |
T |
|
| Q |
212 |
gtgcactagcacctgaaaatgcaaaatttactcctttcttc |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25657990 |
gtgcactagcacctgaaaatgcaaaatttactcctttcttc |
25657950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 16162699 - 16162635
Alignment:
| Q |
91 |
aaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattgcacactcaa |
155 |
Q |
| |
|
||||||| |||||||||||||| || || ||| | || |||||||| ||||||||||||||||| |
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| T |
16162699 |
aaaccttctttgcttttacacaataagggtttttgatttttaaaccagtcaaattgcacactcaa |
16162635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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