View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_high_26 (Length: 257)
Name: NF18301_high_26
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_high_26 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 835859 - 836094
Alignment:
| Q |
22 |
tagggtaagctacttattttccattttcttgtgacttctcatgaatcaaatttggatcatgacctttattttaattccctatgtatttcttgcttagaaa |
121 |
Q |
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| T |
835859 |
tagggtaagctacttattttccattttcttgtgacttctcatgaatcaaatttggatcatgacctttattttaattccctatgtatttcttgcttagaaa |
835958 |
T |
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| Q |
122 |
cctgatattagttagttttgatcatgcaggtcagtgttcgttttgaatggtaatggagcagatattgctaaacattgtattccatctgtgtcgtcaaaaa |
221 |
Q |
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| T |
835959 |
cctgatattagttagttttgatcatgcaggtcagtattcgttttgaatggtaatggagcagatattgctaaacattgtattccatctgtgtcgtcaaaaa |
836058 |
T |
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| Q |
222 |
ggtactttaaatacaataatatcaaatacacttgaa |
257 |
Q |
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| T |
836059 |
ggtactttaaataccataatatcaaatacacttgaa |
836094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 814179 - 814335
Alignment:
| Q |
78 |
tcatgacctttattttaattccctatgtatttcttgcttagaaacctgatattagttagttttgatcatgcaggtcagtgttcgttttgaatggtaatgg |
177 |
Q |
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| T |
814179 |
tcatgacctttatttatttttcccatgtatttgttgtttagaaacttgatagtactca-ttttgatcatgcaggtcagtgtttgtcttgaagggtaatgg |
814277 |
T |
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| Q |
178 |
agcagatattgctaaacattgtattccatctgtgtcgtcaaaaaggtactttaaatac |
235 |
Q |
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| T |
814278 |
tgcagacatcgctaaacactgcattccatcagtgttatcaaaaaggtatttcaaatac |
814335 |
T |
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