View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_high_35 (Length: 208)
Name: NF18301_high_35
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 51856097 - 51856296
Alignment:
| Q |
1 |
caaaactccgacaatgggatcagagcttcacccataaaaaaccctcatcaacataatcataattctaatatccttattaacaaaaaataagttatgtagc |
100 |
Q |
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| T |
51856097 |
caaaactccgacaacgggatcagagcttcacccataaaaaaccctcatcaacataatcataattctaatatccttattaacaaaaaataagttatgtagc |
51856196 |
T |
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| Q |
101 |
agtttaacactacaactcaattagccttgttaaaaagataagccacattgtggcacacacatacttaagtattggtctgatatagacatcatcacagagc |
200 |
Q |
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| T |
51856197 |
agtttaacactacaactcaattagcctcgttaaaaagataagccacattgtggcacacacatacttaagtattggtcagatatagacatcatcacagagc |
51856296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 8945285 - 8945482
Alignment:
| Q |
3 |
aaactccgacaatgggatcagagcttcacccataaaaaaccctcatcaacataatcataattctaatatccttattaacaaaaaataagttatgtagcag |
102 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8945285 |
aaactccgacaacgagatcagagcttcacccataaaaaaccctcatcaacataatcataattctaatatccttattaacaaaaaataagttatgtagtag |
8945384 |
T |
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| Q |
103 |
tttaacactacaactcaattagccttgttaaaaagataagccacattgtggcacacacatacttaagtattggtctgatatagacatcatcacagagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8945385 |
tttaacactacaactcaattagccttgttaaaaagataagccacattgtggcacacacatacttaagtattggtcagatatagacatcatcacagagc |
8945482 |
T |
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