View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_low_13 (Length: 435)
Name: NF18301_low_13
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 46 - 428
Target Start/End: Original strand, 8717558 - 8717936
Alignment:
| Q |
46 |
acccttttaaaatttatgttatgcatagtacaacttagaattgattcttgcttcacgtttttaggcatgtgcttcccctcctcaattggatatggagtat |
145 |
Q |
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| T |
8717558 |
acccttttaaa-tttatgttatgcatagtacaacttagaattgattcttgcttcacgtttttaggcatgtgcttcccctcctcgattggatatggaatat |
8717656 |
T |
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| Q |
146 |
attttttccaaaaacaccaatcgaagaggaatgtagcatcaatttaatgctacaaccaattagtcttgagaacgaaaacgacattggacatgatcaacct |
245 |
Q |
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| T |
8717657 |
-ttctttccagaaacaccgattgaagaggagtgtagcataaaatcactgctaaaaccaaccagtcttgagaacgaaaacggcattggacacgatcaacct |
8717755 |
T |
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| Q |
246 |
gaagcttttgaagaggacagtgctgatgattcttcgttcgttgattcaattttgaacgatggtgtttcaattagtgaagaaacaagttaaactctacctg |
345 |
Q |
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| T |
8717756 |
gaagcttttgaagaggacagtgctgatgattcttcgttcgttgattcaattttgaacgatggtgtttcaattagtaaagaaacaagttaaactcaacctg |
8717855 |
T |
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| Q |
346 |
cttttttaatgattccactttataatagtctttaaattagtgagtggtgtacccatagtcgtgtagatactgtacctatgcta |
428 |
Q |
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| T |
8717856 |
cttttttaatgattccactttataatagtctttaaatta--gagtggtgtacctgtagtcgtgtagatactgtacctatgcta |
8717936 |
T |
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