View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_low_16 (Length: 381)
Name: NF18301_low_16
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 52 - 372
Target Start/End: Complemental strand, 7904436 - 7904116
Alignment:
| Q |
52 |
gccgccctccatcgagcctcaataacatcgactgtttctctagatccacctcgaatcaaattttaattttaaaatgattattatttcaaaataaaacata |
151 |
Q |
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| T |
7904436 |
gccgccctccatcgagcttcaataacatcgactgtttctctagatccacctcgaatcaaattttaattttaaaatgattattatttcaaaataaaacata |
7904337 |
T |
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| Q |
152 |
tatattatgttcaatggagaaattctttacttcataaattcatttattatgtcctctcnnnnnnnnnnnnnnnncattaattatgtgaatagggtttcct |
251 |
Q |
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| T |
7904336 |
tatattatgttcaatggagaaattttttacttcataagttcatttattatgtcctctcaaaacaaaataaaaaacattaattatgtgaatagggtttcct |
7904237 |
T |
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| Q |
252 |
aatttccaactagtcaaaaaaggtgtattttgtcttgttcaaaaaagtttattttgtcgtgtagattgaaaagtcgtgcttttttcttctctgtagtact |
351 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7904236 |
aatttccaactagtcaaaaaaggggtattttgtcttgttcaaaaaagtttattttgtcgtgtagattgaaaagtcgtgcttttttcttctctgtagtact |
7904137 |
T |
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| Q |
352 |
agtattctaaaacatgatgat |
372 |
Q |
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||||||||||||||||||||| |
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| T |
7904136 |
agtattctaaaacatgatgat |
7904116 |
T |
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