View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_low_19 (Length: 365)
Name: NF18301_low_19
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 35655983 - 35656328
Alignment:
| Q |
20 |
ctttaaaatgaccaattttgctactactttagatttgtatgtgattaagtttgcctaatggagatgagcaattgaggaacattttctaagaacaggttac |
119 |
Q |
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| T |
35655983 |
ctttaaaatgaccaattttgctactactttagatttgtatgtgattaagttttcctaatggagatgagcaattgaggaacattttctaagaacaggttac |
35656082 |
T |
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| Q |
120 |
ataccgagcaaaacaacttgagaatgaaaataatctctgtgtaaatagttttggctttaacattttaagtgaacgtgtcacatcttacttgtttcttgga |
219 |
Q |
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| T |
35656083 |
ataccgagcaaaacaacttgagaatgaaaataatctctgtgtaaatagttttggctttaacattttaagtgaacgtgtcacatcttacttgtttcttgga |
35656182 |
T |
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| Q |
220 |
gagttaacattttcttctctggatgtttgttccattcctatgaatgcttgatcgaccaaatataatagtgaacctctacaatttgattgcttgcaatcta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35656183 |
gagttaacattttcttctctggatgtttgttccattcctatgaatgcttgatcgaccaaatataatagtgaagctctacaatttgattgcttgcaatcta |
35656282 |
T |
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| Q |
320 |
gtctgcttttgcagagatctaaggatcatcccctttttgctaaagc |
365 |
Q |
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| T |
35656283 |
gtctgcttttgcagagatctaaggatcatcccctttttgctaaagc |
35656328 |
T |
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