View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_low_20 (Length: 362)
Name: NF18301_low_20
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_low_20 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 4916950 - 4916599
Alignment:
| Q |
11 |
cagaacctgtggcactcatcatgtgacaattgtttcactgaactcccccaatcattccaaaggtcaacataatcatctagtgacggcttgttcttgactt |
110 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4916950 |
cagaacctgcagcactcatcatgtgacaattgtttcactgaactcccccaatcattccaaaggtcaacataatcatctagtgacggcttgttcttgactt |
4916851 |
T |
|
| Q |
111 |
tcaatattgcattgaaaaattcaagaatattactatcatagatatcttcaagaaaataaaattttgaaccagcaaaaagtttagcagggtcatgtatgat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4916850 |
tcaatattgcattgaaaaattcaagaatattactatcatagatatcttcaagaaaataaaattttgaaccagcaaaaagtttagcagggtcatgtatgat |
4916751 |
T |
|
| Q |
211 |
acattcttcagaatcaacccacttaccaccatttattccatccagaacccaaatcttttttgcagatttctccgtaggtttccagttctgttcaaataag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4916750 |
acattcttcagaatcaacccacttaccaccatttattccatccagaacccaaatcttttttgcagatttctccttaggtttccagttctgttcaaataag |
4916651 |
T |
|
| Q |
311 |
tacatatatattttcacaatattatcatgatcagagagagaatcaaggtgac |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4916650 |
tacatatatattttcacaatattatcatgatcagagagagaatcaaggtgac |
4916599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 23 - 361
Target Start/End: Original strand, 2946169 - 2946501
Alignment:
| Q |
23 |
cactcatcatgtgacaattgtttcactgaactcccccaatcattccaaaggtcaacataatcatctagtgacggcttgttcttgactttcaatattgcat |
122 |
Q |
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|||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |||| |
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| T |
2946169 |
cactcatcatatgacaattgcttcactgaacttccccaatcattccaaaggtcaacataatcatctagtgagggcttcttcttgacttccaat---gcat |
2946265 |
T |
|
| Q |
123 |
tgaaaaattcaagaatattactatcatagatatcttcaagaaaataaaattttgaaccagcaaaaagtttagcagggtcatgtatgatacattcttcaga |
222 |
Q |
| |
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||||||| ||||||||| |||||||||| ||||||||||| |||| ||||||||||| |||||||||| ||||| |||||||| ||||||||||| |
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| T |
2946266 |
tgaaaaaaacaagaatatctctatcatagagatcttcaagaacataatattttgaacca---aaaagtttaggtgggtcgtgtatgatgcattcttcaga |
2946362 |
T |
|
| Q |
223 |
atcaacccacttaccaccatttattccatccagaacccaaatcttttttgcagatttctccgtaggtttccagttctgttcaaataagtacatatatatt |
322 |
Q |
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||||||||||||||||| || ||| ||||||||| ||||| ||||||||||| | ||||| ||||||||||| |||||| |||||||| | |||||| |
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| T |
2946363 |
atcaacccacttaccacttttaattgcatccagaatccaaaccttttttgcagctgtctcctccggtttccagttgtgttcacataagtacttgtatatt |
2946462 |
T |
|
| Q |
323 |
ttcacaatattatcatgatcagagagagaatcaaggtga |
361 |
Q |
| |
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||||||||| | ||||||||||| || || ||||||||| |
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| T |
2946463 |
ttcacaatactgtcatgatcagatagggactcaaggtga |
2946501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 3013266 - 3012915
Alignment:
| Q |
11 |
cagaacctgtggcactcatcatgtgacaattgtttcactgaactcccccaatcattccaaaggtcaacataatcatctagtgacggcttgttcttgactt |
110 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||||||||| ||||| || ||||| ||||||| | |
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| T |
3013266 |
cagaacctgcagcactcatcataggacaattgcttcattgaattcccccaatcattccaaaggtcaacataatcttctagcgagggcttattcttgatat |
3013167 |
T |
|
| Q |
111 |
tcaatattgca---ttgaaaaattcaagaatat---tactatcatagatatcttcaagaaaataaaattttgaaccagcaaaaagtttagcagggtcatg |
204 |
Q |
| |
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|| ||||| | |||||| |||||||| | |||||||||||||||| | || ||||| ||||||||| ||||||||||||||||| || |
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| T |
3013166 |
cca---ttgcaaagtagaaaaaaagaagaatatcgttgttatcatagatatcttctaaaacgtaaaactttgaacca---aaaagtttagcagggtcgtg |
3013073 |
T |
|
| Q |
205 |
tatgatacattcttcagaatcaacccacttaccaccatttattccatccagaacccaaatcttttttgcagatttctccgtaggtttccagttctgttca |
304 |
Q |
| |
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|| ||| ||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||| |||||| |||||||||||| |||| | |
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| T |
3013072 |
tacgatgcattcttcagaatcaacccacttaccacctacaattccatcaagaatccaaatcttttttgcagctttctcgtcaggtttccagttgtgttga |
3012973 |
T |
|
| Q |
305 |
aataagtacatatatattttcacaatattatcatgatcagagagagaatcaaggtgac |
362 |
Q |
| |
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|||| ||| | |||||||||| ||| ||||||||||||||||||| |||||||||| |
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| T |
3012972 |
cataaatacttgtatattttcaaaatggtatcatgatcagagagagagtcaaggtgac |
3012915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 146 - 362
Target Start/End: Original strand, 2929651 - 2929864
Alignment:
| Q |
146 |
tcatagatatcttcaagaaaataaaattttgaaccagcaaaaagtttagcagggtcatgtatgatacattcttcagaatcaacccacttaccaccattta |
245 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||||| |||||||| ||||||||||||| || ||||||| ||||||||| |||||||||| || | |
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| T |
2929651 |
tcatagatatcttctagaacataaaactttgaacca---aaaagtttggcagggtcatgtaagacgcattctttagaatcaacgaacttaccacctttaa |
2929747 |
T |
|
| Q |
246 |
ttccatccagaacccaaatcttttttgcagatttctccgtaggtttccagttctgttcaaataagtacatatatattttcacaatattatcatgatcaga |
345 |
Q |
| |
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||||||| |||| ||||| ||| ||||||| |||||| || ||||||||| | || | |||| || | |||||||||||||| ||||||||||||| |
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| T |
2929748 |
ttccatcaagaatccaaaccttctttgcagcattctcctcagctttccagttgtattgatataaaaacttgtatattttcacaatggtatcatgatcaga |
2929847 |
T |
|
| Q |
346 |
gagagaatcaaggtgac |
362 |
Q |
| |
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||||| ||||||||||| |
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| T |
2929848 |
gagagtatcaaggtgac |
2929864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 2929527 - 2929594
Alignment:
| Q |
22 |
gcactcatcatgtgacaattgtttcactgaactcccccaatcattccaaaggtcaacataatcatcta |
89 |
Q |
| |
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||||||||||| ||||||||| | || ||| ||||||||||||||||| |||||||||||||| |||| |
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|
| T |
2929527 |
gcactcatcatatgacaattgctccattgagctcccccaatcattccagaggtcaacataatcttcta |
2929594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 37795022 - 37795096
Alignment:
| Q |
145 |
atcatagatatcttcaagaaaataaaattttgaaccagcaaaaagtttagcagggtcatgtatgatacattcttcaga |
222 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||| ||||| ||| |||||||||||||||| ||||||||||| |
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|
| T |
37795022 |
atcatagatatcttcaagaacatagaattttaaacca---aaaagcttatcagggtcatgtatgatgcattcttcaga |
37795096 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 37794912 - 37794970
Alignment:
| Q |
35 |
gacaattgtttcactgaactcccccaatcattccaaaggtcaacataatcatctagtga |
93 |
Q |
| |
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||||||| || || ||||||| |||| ||||||||||| |||||||||||||| ||||| |
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| T |
37794912 |
gacaattcttccaatgaactctcccattcattccaaagatcaacataatcatcaagtga |
37794970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 23 - 360
Target Start/End: Complemental strand, 1507587 - 1507250
Alignment:
| Q |
23 |
cactcatcatgtgacaattgtttcactgaactcccccaatcattccaaaggtcaacataatcatctagtgacggcttgttcttgactttcaatattgcat |
122 |
Q |
| |
|
|||||||| | ||||||||| | || |||| |||||||||||||||||||||||||||| || |||||||| |||||||||||||||| || | || |
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| T |
1507587 |
cactcatcgtatgacaattgctccattgaattcccccaatcattccaaaggtcaacatagtcttctagtgagggcttgttcttgacttccattgcaagat |
1507488 |
T |
|
| Q |
123 |
tgaaaaattcaagaatattactatcatagatatcttcaagaaaataaaattttgaaccagcaaaaagtttagcagggtcatgtatgatacattcttcaga |
222 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||| |
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|
| T |
1507487 |
acaaaaaaacaagaatattgccatcatagatatcttcaagaatataaaattttgaaccg---aaaagtttagcagggtcgtgtatgacacattcctcaga |
1507391 |
T |
|
| Q |
223 |
atcaacccacttaccacca--tttat-tccatccagaacccaaatcttttttgcagatttctccgtaggtttccagttctgttcaaataagtacatatat |
319 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| |||| ||||||||| ||||| | ||| | ||||||||| || |||||||||||||| ||||| |
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| T |
1507390 |
atcaacccacttaccaccacctttatctccatcaagaatccaaatcttgtttgcctctctcttctcaggtttccaattgtgttcaaataagtaattatat |
1507291 |
T |
|
| Q |
320 |
attttcacaatattatcatgatcagagagagaatcaaggtg |
360 |
Q |
| |
|
||||||||||| || |||||||||||||||| | |||||| |
|
|
| T |
1507290 |
attttcacaatggtaccatgatcagagagagagttaaggtg |
1507250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 28024033 - 28024109
Alignment:
| Q |
143 |
ctatcatagatatcttcaagaaaataaaattttgaaccagcaaaaagtttagcagggtcatgtatgatacattcttcaga |
222 |
Q |
| |
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|||||||||||||||||||||| ||| |||||| ||||| ||||| ||| |||||||||||||||| ||||||||||| |
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| T |
28024033 |
ctatcatagatatcttcaagaacatagaattttaaacca---aaaagcttatcagggtcatgtatgatgcattcttcaga |
28024109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 28023925 - 28023983
Alignment:
| Q |
35 |
gacaattgtttcactgaactcccccaatcattccaaaggtcaacataatcatctagtga |
93 |
Q |
| |
|
||||||| || || ||||||| |||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
28023925 |
gacaattcttccaatgaactctcccattcattccaaagatcaacataatcatcaagtga |
28023983 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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