View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18301_low_24 (Length: 320)

Name: NF18301_low_24
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18301_low_24
NF18301_low_24
[»] chr6 (1 HSPs)
chr6 (9-307)||(22509250-22509548)


Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 22509250 - 22509548
Alignment:
Q  9 ccgacatagtgaaatcctattcgcgaccgcaactgttctttaaaactttggtaataatattgacagggatagaaaaagcgtgcattgtactggttgttta 108  Q
    ||||||||||||||||||||||||||| || || ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22509250 ccgacatagtgaaatcctattcgcgactgcgaccgttgtttaaaaccttggtaataatattgacagggatagaaaaagcgtgcattgtactggttgttta 22509349  T
Q  109 tatgttagtaacaaagataagaggaaagaaagaaaaacaggaagagatactataccagtgtgtatcggtttttatccaattcaaaggattgaaaatgttt 208  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22509350 tatgttagtgaaaaagataagaggaaagaaagaaaaacaggaagagatattataccagtgtgtatcggtttttatccaattcaaaggattgaaaatgttt 22509449  T
Q  209 tcttccattctttgaaaccctaacatgtttgccgatgggtttagcatgagatgatgtcacttcttcgctagaagattcctcatcattatcatcatcaac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  22509450 tcttccattctttgaaaccctaacatgtttgccgatgggtttagcatgagatgatgtcacttcttcgctggaagattcctcattgttatcatcatcaac 22509548  T

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