View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_low_3 (Length: 669)
Name: NF18301_low_3
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Complemental strand, 14397006 - 14396411
Alignment:
| Q |
18 |
aaaagtattttatttactatgtcctaaaagataggcactctcgtttctccgcttttgttattgtactattattttgaaaattatgaaagtannnnnnnna |
117 |
Q |
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| T |
14397006 |
aaaagtattttatttactatgtgctaaaagatggacactctcatttttccgcttttgttattacactattattttgaaaattatgaaagtatttttttta |
14396907 |
T |
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| Q |
118 |
tgaaattttgatttactgttgatggaaagttataattatttttagaggccgtaaaattatatgttttacaatcgatgtgttatatgtgagataatacaat |
217 |
Q |
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| T |
14396906 |
tgaaattttgatttactgttgatggaaagttataattatttttagaggccgtaaaattatatgttttacaatcgatgtgttat--gtgagataatacaat |
14396809 |
T |
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| Q |
218 |
acatacctaagttattattgttactgtgcttcttttacagtgggaattagattgatttttaatggcatctgctaagacattgatatgggaaatcccagtt |
317 |
Q |
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| T |
14396808 |
acatacctaagttattattgttactgtgcttcttttacagtgggaattagattgatttttaatggcatctgctaagacattgatatgggaaatcccagtt |
14396709 |
T |
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| Q |
318 |
ccacaacgaagtgtagaacacttcatgaaatcatacgaatcatggggcgaggatgttacagatgttttgagtttcagagcacatagtatagtgcagacta |
417 |
Q |
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| T |
14396708 |
ccacaacgaagtgtagaacacttcatgaaatcgtacgaatcatggggcgaggatgttacagatgttttgagtttcagagcaca-----tagtgcagacta |
14396614 |
T |
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| Q |
418 |
tatttcctgataattggccggatagaaagattcgaagatttagtacacttactttatattataccatacagtattggaatgtgtgtgccgagccaagaag |
517 |
Q |
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| T |
14396613 |
tatttcctgataattggccggatagaaagattcgaagatttaatacacttact-----ttatactatacagtattggaatgtgtgtgccgagccgagaag |
14396519 |
T |
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| Q |
518 |
aaggagcccgaaacactacatgaaatactaacttctgatatcttccatagatgtttgcttgcatgtgctgctgctgatcaagtactccaaataactcgca |
617 |
Q |
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| T |
14396518 |
aaggagcccgaaacaatacatgaaatactaacttctgatatcttccatagatgtttgcttgcatgtgctgctgctgatcaagtactccaaataactcgca |
14396419 |
T |
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