View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_low_30 (Length: 256)
Name: NF18301_low_30
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 46215187 - 46214945
Alignment:
| Q |
1 |
cggaaagtatgttaaacttaacccttctatgatctattggtaaacttgatggaccagtaagtccactccaagcagcaagaatgttcacaccaggtgctac |
100 |
Q |
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| T |
46215187 |
cggagagtatgttaaacttaacccttctatgatctattggtaaacttgatggaccagtaagtccactccaagcagcaagaatgttcacaccaggtgctac |
46215088 |
T |
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| Q |
101 |
tatatcaggttttagaatttcaagtgtgagtaaacttggccctcttgatgaaaatgctgctactataggagatggtctaattcctaatcttgtgttatga |
200 |
Q |
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| T |
46215087 |
tatatcaggttttagaatttcaagtgtgagtaaacttggccctcttgatgaaaatgctgctactataggagatggtctaattcctaatcttgtgttatga |
46214988 |
T |
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| Q |
201 |
aaagctaatgtagctgtagcttttttagttgttaacacatatt |
243 |
Q |
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| T |
46214987 |
aaagctaatgtagctgtagcttttttagttgttaacacatatt |
46214945 |
T |
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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 18203065 - 18202973
Alignment:
| Q |
7 |
gtatgttaaacttaacccttctatgatctattggtaaacttgatggaccagtaagtccactccaagcagcaagaatgttcacaccaggtgcta |
99 |
Q |
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||||||||||||| | ||| |||||| | || ||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| |
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| T |
18203065 |
gtatgttaaacttcattcttttatgatatgttagtaaacttgatggaccattaagtccactccaaactgcaagaatgttcacaccaggtgcta |
18202973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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