View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18301_low_33 (Length: 234)
Name: NF18301_low_33
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_low_33 |
 | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 16572963 - 16572745
Alignment:
| Q |
1 |
ataggacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
16572963 |
ataggacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaatcatacttctgtagctctttcattactcttagcaa |
16572864 |
T |
|
| Q |
101 |
ggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16572863 |
ggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgc |
16572764 |
T |
|
| Q |
201 |
atgatgctcgttattcatc |
219 |
Q |
| |
|
|| |||||||| ||||||| |
|
|
| T |
16572763 |
attatgctcgtcattcatc |
16572745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16874844 - 16874621
Alignment:
| Q |
1 |
ataggacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgcaa |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
16874844 |
ataggaca-gtcttcacgcctgccacctgtaggagcggcagtgcaatccaaccgacacttcctaaccatgcttctgtagctctttcattactcttagcaa |
16874746 |
T |
|
| Q |
101 |
ggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgc |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16874745 |
ggatggataatttctcagtcaattcgaacgccaaagcctgcaccatagagagttcaacatttcggaacacaatgcacccagatggctgatcccaccttgc |
16874646 |
T |
|
| Q |
201 |
atgatgctcgttattcatctcactc |
225 |
Q |
| |
|
||||||||| | ||||||| ||||| |
|
|
| T |
16874645 |
atgatgctcatcattcatcacactc |
16874621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 16580980 - 16580760
Alignment:
| Q |
5 |
gacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgcaaggat |
104 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
16580980 |
gacatgtcttcacgcctaccatctgaaggagtggcagtgcaatccacccgacacttcctaaccatgcttctgtagctctttcactactcttagcaaggat |
16580881 |
T |
|
| Q |
105 |
ggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatga |
204 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16580880 |
ggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatga |
16580781 |
T |
|
| Q |
205 |
tgctcgttattcatctcactc |
225 |
Q |
| |
|
||||||| ||||||| ||||| |
|
|
| T |
16580780 |
tgctcgtaattcatcacactc |
16580760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 16614400 - 16614620
Alignment:
| Q |
5 |
gacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgcaaggat |
104 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
16614400 |
gacatgtcttcacgcctaccatctgaaggagtggcagtgcaatccacccgacacttcctaaccatgcttctgtagctctttcactactcttagcaaggat |
16614499 |
T |
|
| Q |
105 |
ggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatga |
204 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16614500 |
ggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatga |
16614599 |
T |
|
| Q |
205 |
tgctcgttattcatctcactc |
225 |
Q |
| |
|
||||||| ||||||| ||||| |
|
|
| T |
16614600 |
tgctcgtaattcatcacactc |
16614620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 61 - 209
Target Start/End: Original strand, 233279 - 233427
Alignment:
| Q |
61 |
cctaaccatccttctgtagctctttcattactctttgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacat |
160 |
Q |
| |
|
||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||| ||||||||| |
|
|
| T |
233279 |
cctaaccttgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacat |
233378 |
T |
|
| Q |
161 |
ttcggaacacaatgcacccagatggctgatcccaccttgcatgatgctc |
209 |
Q |
| |
|
||| ||| | ||||||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
233379 |
ttctgaaaataatgcacccagttggctgatcccagcttgcatgaagctc |
233427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 21629731 - 21629507
Alignment:
| Q |
1 |
ataggacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactga-cacttcctaaccatccttctgtagctctttcattactctttgca |
99 |
Q |
| |
|
|||||||||||||| | || |||||||||||| ||||| | || |||||||| || || ||| ||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
21629731 |
ataggacatgtcttgatgcatgccacctgaagcagcggtattgtaatccaaccgatcatcgcctgaccttgcttatgtagctctttcattactctttgca |
21629632 |
T |
|
| Q |
100 |
aggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttg |
199 |
Q |
| |
|
||||| |||| ||| | |||||||||||||||||| ||||||||| | ||| |||||||||||||||| ||||||||||||||||| |||||||| | | |
|
|
| T |
21629631 |
aggatagata-tttattagtcaactcgaacgccaaggcctgcacccttgagtgttcaacatttcggaatacaatgcacccagatggttgatcccagccag |
21629533 |
T |
|
| Q |
200 |
catgatgctcgttattcatctcactc |
225 |
Q |
| |
|
||||| ||||| ||||||| ||||| |
|
|
| T |
21629532 |
catgaagctcgccattcatcacactc |
21629507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 7392216 - 7392068
Alignment:
| Q |
61 |
cctaaccatccttctgtagctctttcattactctttgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacat |
160 |
Q |
| |
|
||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||| ||||||||| |
|
|
| T |
7392216 |
cctaaccttgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacat |
7392117 |
T |
|
| Q |
161 |
ttcggaacacaatgcacccagatggctgatcccaccttgcatgatgctc |
209 |
Q |
| |
|
||||||| | ||||||||||| ||| |||||||| ||||||||| |||| |
|
|
| T |
7392116 |
ttcggaaaataatgcacccagttggttgatcccagcttgcatgaagctc |
7392068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 48298405 - 48298543
Alignment:
| Q |
71 |
cttctgtagctctttcattactctttgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacac |
170 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||| |||||||||||| ||| | |
|
|
| T |
48298405 |
cttctgaagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagagttcaacatttctgaaaat |
48298504 |
T |
|
| Q |
171 |
aatgcacccagatggctgatcccaccttgcatgatgctc |
209 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
48298505 |
aatgcacccagttggctgatcccagcttgcatgaagctc |
48298543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 10841 - 10939
Alignment:
| Q |
96 |
tgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatccca |
194 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| ||||||||||||| | ||| ||||||||||| ||||||||||||| |||||||| || ||||| |
|
|
| T |
10841 |
tgcaaggatagataatttctcagtcaacttgaacgacaaagcctgcacccttgagtgttcaacattttggaacacaatgcatccagatggttggtccca |
10939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University