View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18301_low_36 (Length: 219)

Name: NF18301_low_36
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18301_low_36
NF18301_low_36
[»] chr1 (1 HSPs)
chr1 (25-137)||(22046032-22046150)
[»] chr6 (4 HSPs)
chr6 (88-137)||(23098330-23098379)
chr6 (95-137)||(18176285-18176327)
chr6 (95-137)||(18203668-18203710)
chr6 (95-137)||(18223474-18223516)
[»] scaffold0422 (1 HSPs)
scaffold0422 (88-138)||(10031-10081)
[»] chr2 (1 HSPs)
chr2 (93-138)||(29406335-29406380)
[»] chr3 (1 HSPs)
chr3 (88-125)||(23777085-23777122)
[»] chr5 (1 HSPs)
chr5 (159-200)||(32727570-32727611)


Alignment Details
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 22046150 - 22046032
Alignment:
Q  25 attacatagctgagattttcaagataagatgtagataagaaaaaacaaacacatg---agggataa---cctagaagtgatgagatgaagatgtgaatga 118  Q
    |||| ||| |||| ||||||| || |||||| |||| | ||||||||||||||||   ||||||||   |||| | |||||| |||||||||||||||||    
T  22046150 attagatatctgaaattttcaggagaagatgcagattacaaaaaacaaacacatggtgagggataaaggcctataggtgatgggatgaagatgtgaatga 22046051  T
Q  119 tcaagtattatgacacaat 137  Q
    |||||||||||||||||||    
T  22046050 tcaagtattatgacacaat 22046032  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 23098379 - 23098330
Alignment:
Q  88 cctagaagtgatgagatgaagatgtgaatgatcaagtattatgacacaat 137  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23098379 cctagaagtgatgagatgaagatgtgaacgatcaagtattatgacacaat 23098330  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 18176327 - 18176285
Alignment:
Q  95 gtgatgagatgaagatgtgaatgatcaagtattatgacacaat 137  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  18176327 gtgatgggatgaagatgtgaatgatcaagtattatgacacaat 18176285  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 18203668 - 18203710
Alignment:
Q  95 gtgatgagatgaagatgtgaatgatcaagtattatgacacaat 137  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  18203668 gtgatgggatgaagatgtgaatgatcaagtattatgacacaat 18203710  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 18223474 - 18223516
Alignment:
Q  95 gtgatgagatgaagatgtgaatgatcaagtattatgacacaat 137  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  18223474 gtgatgggatgaagatgtgaatgatcaagtattatgacacaat 18223516  T

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Target: scaffold0422 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 10031 - 10081
Alignment:
Q  88 cctagaagtgatgagatgaagatgtgaatgatcaagtattatgacacaatc 138  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  10031 cctataagtgatgagatgaagatgtgaatgatcaagtattatgacagaatc 10081  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 29406335 - 29406380
Alignment:
Q  93 aagtgatgagatgaagatgtgaatgatcaagtattatgacacaatc 138  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  29406335 aagtgatgagatgaagatgtgaatgatcaagtattatgacataatc 29406380  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 23777085 - 23777122
Alignment:
Q  88 cctagaagtgatgagatgaagatgtgaatgatcaagta 125  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23777085 cctagaagtgatgagatgaagatgtgaatgatcaagta 23777122  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 32727570 - 32727611
Alignment:
Q  159 aaaagggtaccaataaatctctattcattaagattttagttc 200  Q
    ||||||| |||||||||||||||||||||| | |||||||||    
T  32727570 aaaagggcaccaataaatctctattcattaggtttttagttc 32727611  T

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