View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18301_low_5 (Length: 600)
Name: NF18301_low_5
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 251 - 586
Target Start/End: Complemental strand, 29258248 - 29257898
Alignment:
| Q |
251 |
aaagtgaggaaaatgagcttgttggttttgataataagggttatgtggttgt------------ggttgttcttgagcaccac---taacactaaaattt |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
29258248 |
aaagtgaggaaaatgagcttgttggttttgataataagggttatgtggttgttgatgttgttgtggttgttcttgagcaccaccactaacactaaaattt |
29258149 |
T |
|
| Q |
336 |
cttccaagagagagttcagtgtgagcttgagcttgaggcaaagttgttcttgaagaattatgaggttcataatttgatgtttgagttgtgttattgcaaa |
435 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29258148 |
cttcctagagagagttcagtgtgagcttgagcttgagccaaagttgttcttgaagaattatgaggttcataatttgatgtttgagttgtgttattgcaaa |
29258049 |
T |
|
| Q |
436 |
tcaaagaagaattagaagtacttggaggacttatttgaagagaaagatcaggtggtgttgttgatgttgaaattggttcaatgaaaatcccttccaaggg |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29258048 |
tcaaagaagaattagaagtacttggaggacttatttgaagagaaagatcaggtggtgttgttgatgttgaaattggttcaatgaaaatcccttccaaggg |
29257949 |
T |
|
| Q |
536 |
catcttctttagaaaaaggtgaactaaccttgataatatatatatggttat |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29257948 |
catcttctttagaaaaaggtgaactaaccttgataatatatatatggttat |
29257898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 29258498 - 29258292
Alignment:
| Q |
1 |
aaggagacggagttgaattaggcatgtggtgatataaacacatcttgggatctttttctcttgaatgttccatggctggtagaaaagggaatgaacggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29258498 |
aaggagacggagttgaattaggcatgtggtgatataaacacatcttgggatctttttctcttgaatgttccatggctggtagaaaagggaatgaacggtt |
29258399 |
T |
|
| Q |
101 |
gtgataaactggaattcctttgattggtcttaacccttctgatgatgttgatgacacatcaagcaatgaaacaccataatttatatgattcatgtgactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29258398 |
gtgataaactggaattcctttgattggtcttaacccttctgatgatgttgatgacacatcaagcaatgaaacaccataatttatgtgattcatgtgactt |
29258299 |
T |
|
| Q |
201 |
gaagaat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
29258298 |
gaagaat |
29258292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University