View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_low_6 (Length: 590)
Name: NF18301_low_6
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 38097458 - 38097247
Alignment:
| Q |
24 |
aggcttttattttattcaaatcaagttaacttgtattattatttcaaacgaattcatggcacaatcatatatagaagaatgaaaattacccgaggagcat |
123 |
Q |
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| T |
38097458 |
aggcttttattttattcaaatcaagttaacttgtattatt---tcaaacgaattcatggcacaatcatatatagaagaatgaaaattatccgaggagcat |
38097362 |
T |
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| Q |
124 |
aagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacctctaagttgttgcaattagataaatgactctaagt |
223 |
Q |
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| T |
38097361 |
aagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacctctaagttgttgcaattagataaatgactctaagt |
38097262 |
T |
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| Q |
224 |
agagtcatcaataat |
238 |
Q |
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||||||||||||||| |
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| T |
38097261 |
agagtcatcaataat |
38097247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 433 - 574
Target Start/End: Complemental strand, 38096967 - 38096829
Alignment:
| Q |
433 |
gaccagaccagaccagatcaccatcatttcctactctctttggatgatttcataagcggtatgcatttctctttcactnnnnnnnnttttgcctccctct |
532 |
Q |
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| T |
38096967 |
gaccagaccataccagatcaccatcatttcctactctctttggatgatttcataagcggtatgcatttctctttcact---cccccttttgcctccctct |
38096871 |
T |
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| Q |
533 |
tttcctcttttgtttcctttaacttcacctcatccatcccta |
574 |
Q |
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| T |
38096870 |
tttcctcttttgtttcctttaacttcacctcatccatcccta |
38096829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 285 - 412
Target Start/End: Complemental strand, 38097152 - 38097020
Alignment:
| Q |
285 |
aggcttgcattaaggtcacaaatgcactttactaaataagatga-----aatcgagatttgaagagaaattaatattacatgcatcaacctataattgct |
379 |
Q |
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| T |
38097152 |
aggcttgcattaaggtcagaaatgcactttactaaataagatgagatgaaatcgggatttgaaaagaaattaatattacatgcatcaacctataattgct |
38097053 |
T |
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| Q |
380 |
agtgtactcattacatattctacctagactaga |
412 |
Q |
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| T |
38097052 |
agtgtactcattacatattctacctagactaga |
38097020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 6783773 - 6783852
Alignment:
| Q |
121 |
cataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacctctaagttgttg |
200 |
Q |
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| T |
6783773 |
cataagagatagaagtttgtgccaaaacatgagctccatcattagtttttcgcctggtgaaaacaacttgaaagttgttg |
6783852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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