View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_low_7 (Length: 561)
Name: NF18301_low_7
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 26 - 305
Target Start/End: Complemental strand, 42454403 - 42454124
Alignment:
| Q |
26 |
caactgtgccatataattaatacgatatatgtacattggctctaactcaaccattacaaaaccggtttgtatggagagggctacctcatcactgataaac |
125 |
Q |
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| T |
42454403 |
caactgtgccatataattaatacgatatatgtacattggctctaactcaaccattacaaaaccggtttgtatggagagggctacctcatcactgataaac |
42454304 |
T |
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| Q |
126 |
acgttttcggactatatctcctctaatgtataactctcagcattgtgcaacagaaacattatatgatttggaatcaacgcatacaagagtagcaggtaat |
225 |
Q |
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| T |
42454303 |
acgttttcggactatatctcatctaatgtataactctcagcattgtgcaacagaaacattatatgatttggaatcaacgcatacaagagtagcaggtaat |
42454204 |
T |
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| Q |
226 |
gatatcatttggaagcatcacaggttccaaaaacctaatttcagagagtatttgcacaaccaataaaaacatcaataaat |
305 |
Q |
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| T |
42454203 |
gatatcatttggaagcatcacaggttccaaaaacctaatttcagagagtatttgcacaaccaataaaaacatcaataaat |
42454124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 345 - 561
Target Start/End: Complemental strand, 42454128 - 42453912
Alignment:
| Q |
345 |
taaataaaatattcatcattaaaaacaaaataactaagcaaattgcatctgcatcaatgttggcttattcctaatttcctgataaaaaagaaccatagag |
444 |
Q |
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| T |
42454128 |
taaataaaatattcatcattaaaaacaaaataactaagcaaattgcatctgcatcaatgttggcttattcctaatttcctgataaaaaagaaccatagag |
42454029 |
T |
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| Q |
445 |
ctgcattttcatatcatgctatctaattttgaaggcatccttcgaatccaattttcataaaatggaggaaaaggtgaacggaacattggatgccttagaa |
544 |
Q |
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| T |
42454028 |
ctgcattttcatatcatgctatctaattttgaaggcatccttcgaatccaattttcataaaatggaggaaaaggtgaacggaacattggatgccttagaa |
42453929 |
T |
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| Q |
545 |
aataaagaaaccaaaca |
561 |
Q |
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| T |
42453928 |
aataaagaaaccaaaca |
42453912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 373
Target Start/End: Original strand, 47973248 - 47973351
Alignment:
| Q |
274 |
tatttgcacaaccaataaaaaca--tcaataaatgaagtccaaaatatgaattaataagtgtgatgataaacttaa--ataaaatattcatcattaaaaa |
369 |
Q |
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|||||||||||| |||||||| | | |||| |||||| |||||||||||||| ||||||| ||||||||| | || ||||| |||| |||| |||||| |
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| T |
47973248 |
tatttgcacaacaaataaaaaaacgtaaatacatgaagaccaaaatatgaatttataagtgagatgataaaataaaatataaattattaatcactaaaaa |
47973347 |
T |
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| Q |
370 |
caaa |
373 |
Q |
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|||| |
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| T |
47973348 |
caaa |
47973351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 461
Target Start/End: Original strand, 47973357 - 47973419
Alignment:
| Q |
397 |
atcaatgttggcttattcctaatttcctgataaaaaagaaccatagagctgcattttcatatcat |
461 |
Q |
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|||||||||||||||||||||| ||||| || ||||||||||| | || |||| ||||||||||| |
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| T |
47973357 |
atcaatgttggcttattcctaa-ttcctaat-aaaaagaaccacaaagttgcactttcatatcat |
47973419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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