View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18301_low_8 (Length: 560)
Name: NF18301_low_8
Description: NF18301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18301_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Original strand, 46215256 - 46215799
Alignment:
| Q |
1 |
agtccagctgctataaaatcagcaatcatgacaacagcttatgttcatgataatactattaaacctcttagagatgcttcttctgctgaattttcaactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46215256 |
agtccagctgctataaaatcagcaatcatgacaacagcttatgttcatgataatactattaaacctcttagagatgcttcttctgctgaattttcaactc |
46215355 |
T |
|
| Q |
101 |
cttatgatcatggtgctggccatattaatcctagaaaagctcttgatccaggtttattatatgatatcgaacctcaagattactttgagtttctttgcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46215356 |
cttatgatcatggtgctggccatattaatcctagaaaagctcttgatccaggtttattatatgatatcgaacctcaagattactttgagtttctttgcac |
46215455 |
T |
|
| Q |
201 |
aaagaaactaagcccttcagaattagtagttttttctaaaaattcaaacagaaattgcaaacacactcttgctagtgctagtgacttgaactatcctgct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46215456 |
aaagaaactaagcccttcagaattagtagttttttctaaaaattcaaacagaaattgcaaacacactcttgctagtgctagtgacttgaactatcctgct |
46215555 |
T |
|
| Q |
301 |
atatcagttgtgattccagcaaaaccaaccaattttgcttcgacgattcaccgaactgttacaaatgttggtcctgctgtttccaaatatcatgtcattg |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46215556 |
atatcagttgtgattccagcaaaaccaaccaattttgcttcaacgattcaccgaactgttaccaatgttggtcctgctgtttccaaatatcatgtcattg |
46215655 |
T |
|
| Q |
401 |
ttacaccatttaaaggcgctgttgttaaagttgagccagatacattgaattttacaagaaaatatcagaaactatcttacaagatcagtttcaaagtgac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46215656 |
ttacaccatttaaaggcgctgttgttaaagttgagccagatacattgaattttacaagaaaatatcagaaactatcttacaagatcagtttcaaagtgac |
46215755 |
T |
|
| Q |
501 |
atctaggcaaagtgaaccagaatttggaggtttggtgtggaaag |
544 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46215756 |
atctaggcaaagtgaaccagaatttggaggtttggtgtggaaag |
46215799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 366754 - 366516
Alignment:
| Q |
1 |
agtccagctgctataaaatcagcaatcatgacaacagctta---tgttcatgataatactattaaacctcttagagatgcttcttctgctgaattttcaa |
97 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| |||| |||||||||||||| |||||||||||| ||| || |||||||||||||||||||| |
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| T |
366754 |
agtccagctactataaaatctttaatcatgacaacaacttactatgttcatgataatattattaaacctctcggagttgtttcttctgctgaattttcaa |
366655 |
T |
|
| Q |
98 |
ctccttatgatcatggtgctggcc----atattaatcctagaaaagctcttgatccaggtttattatatgatatcgaacctcaagattactttgagtttc |
193 |
Q |
| |
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|||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||||| | |||||| |
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| T |
366654 |
ctccttatgatcatggtgctggacctatttattaaacctagaaaagctcttgatccaggtttagtatatgatattaaaccacaagattacatcgagttta |
366555 |
T |
|
| Q |
194 |
tttgcacaaagaaactaagcccttcagaattagtagttt |
232 |
Q |
| |
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|||||||||||||| |||| ||||||||| ||| ||||| |
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|
| T |
366554 |
tttgcacaaagaaagtaagtccttcagaaataggagttt |
366516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 3215811 - 3215775
Alignment:
| Q |
7 |
gctgctataaaatcagcaatcatgacaacagcttatg |
43 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
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|
| T |
3215811 |
gctgctataaaatcagcaatcatgacaactgcttatg |
3215775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 3219317 - 3219281
Alignment:
| Q |
7 |
gctgctataaaatcagcaatcatgacaacagcttatg |
43 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
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|
| T |
3219317 |
gctgctataaaatcagcaatcatgacaactgcttatg |
3219281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 3207879 - 3207847
Alignment:
| Q |
3 |
tccagctgctataaaatcagcaatcatgacaac |
35 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |
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|
| T |
3207879 |
tccagctgctataaaatccgcaatcatgacaac |
3207847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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